Sequence details NCBI ID: XM_004834639.1 (Coding sequence)   Best Hit

Details from NCBI annotation

Gene Symbol Usp13
Gene Name ubiquitin specific peptidase 13 (isopeptidase T-3), transcript variant X2
Entrez Gene ID 101717563

Database interlinks

Part of NW_004624730.1 (Scaffold)

For more information consult the page for NW_004624730.1 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible homologs of the naked mole-rat gene and compared to it.

USP13 ENSCPOG00000002315 (Guinea pig)

Gene Details

ubiquitin specific peptidase 13 (isopeptidase T-3)

External Links

Gene Match (Ensembl Protein ID: ENSCPOP00000002102, Guinea pig)

Protein Percentage 98.15%
CDS Percentage 94.96%
Ka/Ks Ratio 0.04422 (Ka = 0.0086, Ks = 0.1937)

USP13 ENSG00000058056 (Human)

Gene Details

ubiquitin specific peptidase 13 (isopeptidase T-3)

External Links

Gene Match (Ensembl Protein ID: ENSP00000263966, Human)

Protein Percentage 98.37%
CDS Percentage 93.34%
Ka/Ks Ratio 0.03372 (Ka = 0.0088, Ks = 0.2623)

Usp13 ENSMUSG00000056900 (Mouse)

Gene Details

ubiquitin specific peptidase 13 (isopeptidase T-3)

External Links

Gene Match (Ensembl Protein ID: ENSMUSP00000072155, Mouse)

Protein Percentage 96.27%
CDS Percentage 89.39%
Ka/Ks Ratio 0.03509 (Ka = 0.0178, Ks = 0.5085)

Usp13 ENSRNOG00000030639 (Rat)

Gene Details

ubiquitin specific peptidase 13 (Usp13), mRNA

External Links

Gene Match (Ensembl Protein ID: ENSRNOP00000039985, Rat)

Protein Percentage 95.69%
CDS Percentage 89.01%
Ka/Ks Ratio 0.04006 (Ka = 0.0207, Ks = 0.5175)

Genome Location

Sequence Coding sequence

Length: 2586 bp    Location: 57384906..57495765   Strand: +
Raw sequence   
>XM_004834639.1
ATGCAGCGCCGGGGCGCCCTGTTCGGCGTGCTGGGCGGCGGCAGGAAGATGGCTGCAGGCGACATCGGCGAGCTGCTGGTGCCCCACATGCCCACGATCCGCGTGCCCAGGTCCGGGGACAGGGTCTACAAGAACGAGTGCGCCTTCTCCTATGACTCCCCCAACTCTGAAGGTGGACTCTATGTATGCATGAATACGTTTTTGGCCTTTGGAAGGGAACATGTTGAAAGACATTTTCGAAAAACTGGACAGAGTGTCTACATGCACCTAAAAAGACATGTGAAAGAGAAGGTAAGAGGGGCATCTGGTGGAGCTTTACCACAAAGGAGGAATTCCAAGATATTTTTAGATCTAGATACTGATGACGATTTAAATAGCGACGATTATGAATATGAAGATGAAGCCAAACTTGTTATATTCCCAGACCACTATGAAATAGCACTACCAAATATTGAGGAGTTACCAGCCCTGGTAACAATTGCTTGTGATGCAGTTCTCAGCTCGAAATCTCCATACAGAAAGCAGGACCCAGACACATGGGAAAATGAATTGCCAGTATCTAAATATGCCAATAACCTCACCCAGCTGGACAATGGAGTCAGGATTCCTCCAAGTGGTTGGAAGTGTGCCAGGTGTGACCTTCGGGAGAACCTCTGGTTGAATTTGACCGACGGCTCCATCCTGTGTGGAAAGTGGTTCTTTGACAGCTCTGGGGGTAATGGGCATGCGCTGGAGCATTATAGAGACATGGGCTATCCTTTGGCTGTGAAGTTGGGAACCATCACTCCTGATGGGGCAGATGTTTATTCTTTTCAAGAAGAGGAACCTGTTTTGGATCCTCACTTGGCCAAGCATTTAGCACATTTTGGAATTGATATGCTTCACATGCATGGGACAGAGAATAGGCTCCGGGACAATGACATCAAGCCGAGGGTCAGTGAGTGGGAAGTGATCCAGGAGTCGGGGACAAAGCTGAAGCCCATGTATGGCCCCGGGTACACGGGCCTGAAGAACCTGGGCAACAGCTGCTATCTCAGCTCTGTCATGCAGGCCATCTTCAGCATCCCAGAGTTCCAGAGAGCGTATGTAGGAAATCTTCCAAGAATATTTGACTACTCGCCTTTAGATCCAACACAAGATTTCAACACACAGATGACTAAGTTAGGACACGGCCTTCTCTCAGGCCAGTATTCAAAGCCTCCAGTGAAAGCTGAGCTCATTGAGCAGGTGATGAAGGAGGAGCACAAGCCTCAACAGAATGGGATCTCTCCACGTATGTTTAAGGCTTTTGTCAGCAAGAGCCACCCAGAATTCTCCTCTAACAGACAACAAGATGCCCAGGAGTTTTTCTTGCACTTGGTGAATCTTGTAGAGAGAAATCGCATTGGCTCAGAAAACCCAAGTGATGTTTTTCGTTTTTTGGTGGAAGAACGTATTCAGTGCTGCCAGACCCGAAAAGTCCGCTACACAGAGAGGGTGGATTACCTGATGCAGCTACCTGTGGCCATGGAGGCAGCAACCAACAAAGATGAACTGATTGCCTATGAATTAACACGAAGAGAAGCAGAAGCAAACAGAAGACCCCTTCCTGAACTGGTGCGTGCCAAGATACCATTCAGTGCCTGCCTTCAGGCTTTTTCAGAACCAGAAAACGTTGATGATTTCTGGAGCAGCGCCCTACAAGCGAAGTCTGCAGGCGTGAAAACATCTCGCTTTGCCTCATTCCCCGAATACTTGGTAGTGCAGATAAAGAAGTTCACTTTTGGTCTTGACTGGGTTCCCAAAAAATTTGATGTTTCTATTGATATGCCAGATCTACTTGATATCAACCATCTCCGAGCCAGAGGGTTACAGCCAGGAGAGGAGGAACTTCCAGACATCAGCCCTCCCATAGTCATTCCTGATGACTCCAAAGATCGTCTGATGAACCAATTGATAGACCCCTCAGACATTGATGAGTCATCGGTGATGCAGCTGGCTGAGATGGGCTTCCCTCTGGAAGCCTGCCGGAAGGCTGTGTACTTTACTGGAAATATGGGAGCTGAGGTGGCCTTCAACTGGATCATTATCCACATGGAAGAGCCTGATTTTGCCGAACCGCTGACCATGCCTGGTTATGGAGGAGCAGCGTCTGCTGGAGCCTCGGTATTTGGTGCTAGTGGGTTGGATAACCAGCCTCCAGAGGAAATTGTAGCTATCATTACCTCCATGGGATTCCAGAGAAATCAGGCTGTGCAGGCATTACGAGCAACGAACAATAACCTGGAAAGAGCACTGGATTGGATCTTTAGCCACCCTGAGTTTGAAGAGGACAGCGACTTTGTGATTGAGATGGAGAATAATGCCAATGCCAACATTATTTCTGAGGCCAAGCCTGAAGGACCTAGAGTCAAGGATGGCTCTGGAATGTATGAATTATTTGCATTTATCAGTCACATGGGAACATCTACAATGAGTGGCCACTATGTTTGCCATATCAAAAAGGAAGGAAGATGGGTGATCTACAATGACCACAAAGTCTGTGCCTCAGAACGGGCTCCTAAAGACCTGGGCTACATGTACTTTTACCGCAGAATACCAAGCTAA

Related Sequences

XP_004834696.1 Protein

Usp13 PREDICTED: ubiquitin carboxyl-terminal hydrolase 13 isoform X2 [Heterocephalus glaber]

Length: 861 aa      View alignments
>XP_004834696.1
MQRRGALFGVLGGGRKMAAGDIGELLVPHMPTIRVPRSGDRVYKNECAFSYDSPNSEGGLYVCMNTFLAFGREHVERHFRKTGQSVYMHLKRHVKEKVRGASGGALPQRRNSKIFLDLDTDDDLNSDDYEYEDEAKLVIFPDHYEIALPNIEELPALVTIACDAVLSSKSPYRKQDPDTWENELPVSKYANNLTQLDNGVRIPPSGWKCARCDLRENLWLNLTDGSILCGKWFFDSSGGNGHALEHYRDMGYPLAVKLGTITPDGADVYSFQEEEPVLDPHLAKHLAHFGIDMLHMHGTENRLRDNDIKPRVSEWEVIQESGTKLKPMYGPGYTGLKNLGNSCYLSSVMQAIFSIPEFQRAYVGNLPRIFDYSPLDPTQDFNTQMTKLGHGLLSGQYSKPPVKAELIEQVMKEEHKPQQNGISPRMFKAFVSKSHPEFSSNRQQDAQEFFLHLVNLVERNRIGSENPSDVFRFLVEERIQCCQTRKVRYTERVDYLMQLPVAMEAATNKDELIAYELTRREAEANRRPLPELVRAKIPFSACLQAFSEPENVDDFWSSALQAKSAGVKTSRFASFPEYLVVQIKKFTFGLDWVPKKFDVSIDMPDLLDINHLRARGLQPGEEELPDISPPIVIPDDSKDRLMNQLIDPSDIDESSVMQLAEMGFPLEACRKAVYFTGNMGAEVAFNWIIIHMEEPDFAEPLTMPGYGGAASAGASVFGASGLDNQPPEEIVAIITSMGFQRNQAVQALRATNNNLERALDWIFSHPEFEEDSDFVIEMENNANANIISEAKPEGPRVKDGSGMYELFAFISHMGTSTMSGHYVCHIKKEGRWVIYNDHKVCASERAPKDLGYMYFYRRIPS