Sequence details NCBI ID: XM_004834612.1 (Coding sequence)   Best Hit

Details from NCBI annotation

Gene Symbol Nlgn1
Gene Name neuroligin 1, transcript variant X3
Entrez Gene ID 101705799

Database interlinks

Part of NW_004624730.1 (Scaffold)

For more information consult the page for NW_004624730.1 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible homologs of the naked mole-rat gene and compared to it.

NLGN1 ENSCPOG00000005752 (Guinea pig)

Gene Details

neuroligin 1

External Links

Gene Match (Ensembl Protein ID: ENSCPOP00000005186, Guinea pig)

Protein Percentage 99.33%
CDS Percentage 95.44%
Ka/Ks Ratio 0.01506 (Ka = 0.003, Ks = 0.2)

NLGN1 ENSG00000169760 (Human)

Gene Details

neuroligin 1

External Links

Gene Match (Ensembl Protein ID: ENSP00000392500, Human)

Protein Percentage 98.65%
CDS Percentage 94.43%
Ka/Ks Ratio 0.02774 (Ka = 0.0063, Ks = 0.227)

Nlgn1 ENSMUSG00000063887 (Mouse)

Gene Details

neuroligin 1

External Links

Gene Match (Ensembl Protein ID: ENSMUSP00000074565, Mouse)

Protein Percentage 97.79%
CDS Percentage 91.11%
Ka/Ks Ratio 0.02982 (Ka = 0.0116, Ks = 0.3893)

Nlgn1 ENSRNOG00000032576 (Rat)

Gene Details

neuroligin 1 (Nlgn1), mRNA

External Links

Gene Match (Ensembl Protein ID: ENSRNOP00000049486, Rat)

Protein Percentage 97.91%
CDS Percentage 91.2%
Ka/Ks Ratio 0.02737 (Ka = 0.0109, Ks = 0.3968)

Genome Location

Sequence Coding sequence

Length: 2445 bp    Location: 51625813..52295583   Strand: +
Raw sequence   
>XM_004834612.1
ATGGCACTTGCCAGATGCATGTGGCCAAATTATGTTTGGAGAGCAGTGATGGCATGTTTGGTACACAAGGGATTGGGTGCCTCGTTGACTCTCTGTATGTTGGGAAGTTTGCTTCAGGCTGCCCACGTGCTTTCAGAAAAATTGGATGATGTGGATCCACTGGTGACTACCAACTTTGGCAAGATAAGAGGGCTTAAGAAAGAACTCAATAATGAAATTTTGGGGCCTGTTATTCAGTTTCTTGGGGTTCCATACGCAGCTCCACCAACCGGAGAACATCGTTTTCAGCCTCCAGAGCCACCATCTCCGTGGTCAGATATCAGGAATGCCACTCAGTTTGCTCCTGTGTGTCCCCAGAATATTATTGATGGCAGATTGCCAGAAGTCATGCTTCCTGTGTGGTTTACTAATAACTTGGATGTAGTTTCATCATATGTGCAAGACCAGAGTGAAGACTGCCTGTATTTAAACATATATGTCCCAACCGAGGATGATATCCGGGACAGTGGAGGCCCCAAACCAGTGATGGTATATATCCATGGTGGCTCATACATGGAAGGCACTGGAAATTTATATGATGGGAGTGTCCTGGCAAGCTATGGCAATGTGATTGTCATCACGGTCAACTATCGACTGGGGGTACTAGGTTTCTTGAGTACAGGGGACCAGGCTGCAAAAGGAAACTATGGACTTCTTGATCTCATACAGGCTTTAAGATGGACTAGTGAAAACATTGGATTCTTTGGTGGTGACCCCTTGAGAATCACTGTTTTTGGATCAGGCGCTGGGGGTTCATGTGTCAATCTGCTGACTTTATCCCATTATTCTGAAGGACTTTTCCAACGAGCAATAGCTCAAAGTGGAACAGCCCTTTCCAGCTGGGCTGTTAGTTTCCAGCCTGCAAAATATGCTAGAATGTTGGCCACAAAAGTTGGCTGCAATGTTTCAGATACAGTAGAGTTAGTGGAATGCCTCCAGAAGAAGCCTTACAAGGAACTTGTTGATCAAGATATTCAACCAGCCCGATACCACATAGCCTTTGGACCTGTGATTGATGGTGATGTAATACCAGATGATCCTCAGATATTGATGGAACAAGGAGAGTTTCTCAATTATGATATAATGTTAGGAGTTAACCAAGGGGAAGGGTTAAAATTTGTTGAAAATATAGTAGATAGTGATGATGGTATATCTGCTAGTGATTTTGACTTTGCTGTTTCCAATTTTGTTGATAATTTATATGGATATCCAGAAGGCAAAGACGTTTTGAGAGAAACCATTAAATTCATGTATACCGATTGGGCTGACCGGCATAACCCTGAAACCAGAAGGAAGACATTACTGGCTTTGTTTACGGACCATCAGTGGGTGGCACCAGCTGTAGCCACGGCAGATCTTCACTCAAACTTTGGTTCACCCACATACTTCTATGCTTTTTACCATCATTGCCAAACAGATCAGGTTCCAGCTTGGGCTGATGCAGCCCATGGAGATGAGGTTCCGTATGTACTAGGAATACCCATGATTGGTCCTACAGAGTTATTTCCTTGCAATTTCTCCAAAAATGATGTGATGCTGAGTGCAGTTGTAATGACTTACTGGACAAATTTTGCTAAAACTGGTGACCCAAATCAACCAGTTCCTCAAGATACAAAATTCATCCATACTAAACCCAATCGCTTTGAAGAAGTAGCATGGACCAGATACTCCCAGAAAGACCAACTTTATCTCCATATTGGATTAAAACCAAGGGTTAAAGAGCATTACAGAGCCAATAAGGTGAACCTCTGGTTGGAGCTGGTACCTCATCTGCATAATCTCAATGACATTTCTCAGTATACCTCGACAACAACTAAAGTGCCATCGACTGACATCACTCTCAGACCTACAAGAAAAAATTCTGTACCTGTCACATCCGCCTTTCCCACGGCCAAGCAAGATGATCCCAAACAACAACCAAGTCCCTTTTCAGTGGATCAAAGGGACTACTCCACAGAGCTCAGTGTCACTATTGCAGTCGGAGCATCACTGCTCTTTCTGAACATCTTGGCCTTTGCAGCCCTGTACTACAAAAAGGATAAGAGGAGACATGATGTTCACCGAAGGTGCAGCCCTCAGCGCACGACTACCAATGACCTGACCCATGCCCAGGAAGAGGAAATTATGTCTCTCCAAATGAAGCACACTGATTTGGATCATGAATGTGAGTCCATCCATCCACATGAGGTGGTTCTTCGGACCGCCTGCCCCCCAGATTACACACTAGCTATGAGAAGATCACCTGATGATGTTCCCTTAATGACACCCAACACCATTACGATGATTCCCAACACTATACCAGGGATTCAGCCCTTACACACATTCAATACATTTACTGGAGGACAGAACAATACTCTGCCCCACCCCCATCCCCACCCCCATTCACATTCAACAACCAGGGTATAG

Related Sequences

XP_004834669.1 Protein

Nlgn1 PREDICTED: neuroligin-1-like isoform X3 [Heterocephalus glaber]

Length: 814 aa      View alignments
>XP_004834669.1
MALARCMWPNYVWRAVMACLVHKGLGASLTLCMLGSLLQAAHVLSEKLDDVDPLVTTNFGKIRGLKKELNNEILGPVIQFLGVPYAAPPTGEHRFQPPEPPSPWSDIRNATQFAPVCPQNIIDGRLPEVMLPVWFTNNLDVVSSYVQDQSEDCLYLNIYVPTEDDIRDSGGPKPVMVYIHGGSYMEGTGNLYDGSVLASYGNVIVITVNYRLGVLGFLSTGDQAAKGNYGLLDLIQALRWTSENIGFFGGDPLRITVFGSGAGGSCVNLLTLSHYSEGLFQRAIAQSGTALSSWAVSFQPAKYARMLATKVGCNVSDTVELVECLQKKPYKELVDQDIQPARYHIAFGPVIDGDVIPDDPQILMEQGEFLNYDIMLGVNQGEGLKFVENIVDSDDGISASDFDFAVSNFVDNLYGYPEGKDVLRETIKFMYTDWADRHNPETRRKTLLALFTDHQWVAPAVATADLHSNFGSPTYFYAFYHHCQTDQVPAWADAAHGDEVPYVLGIPMIGPTELFPCNFSKNDVMLSAVVMTYWTNFAKTGDPNQPVPQDTKFIHTKPNRFEEVAWTRYSQKDQLYLHIGLKPRVKEHYRANKVNLWLELVPHLHNLNDISQYTSTTTKVPSTDITLRPTRKNSVPVTSAFPTAKQDDPKQQPSPFSVDQRDYSTELSVTIAVGASLLFLNILAFAALYYKKDKRRHDVHRRCSPQRTTTNDLTHAQEEEIMSLQMKHTDLDHECESIHPHEVVLRTACPPDYTLAMRRSPDDVPLMTPNTITMIPNTIPGIQPLHTFNTFTGGQNNTLPHPHPHPHSHSTTRV