Sequence details NCBI ID: XM_004834531.1 (Coding sequence)   Best Hit

Details from NCBI annotation

Gene Symbol Ift80
Gene Name intraflagellar transport 80 homolog (Chlamydomonas), transcript variant X1
Entrez Gene ID 101702438

Database interlinks

Part of NW_004624730.1 (Scaffold)

For more information consult the page for NW_004624730.1 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible homologs of the naked mole-rat gene and compared to it.

IFT80 ENSCPOG00000026743 (Guinea pig)

Gene Details

intraflagellar transport 80 homolog (Chlamydomonas)

External Links

Gene Match (Ensembl Protein ID: ENSCPOP00000021087, Guinea pig)

Protein Percentage 90.31%
CDS Percentage 89.97%
Ka/Ks Ratio 0.18589 (Ka = 0.0644, Ks = 0.3462)

IFT80 ENSG00000068885 (Human)

Gene Details

intraflagellar transport 80 homolog (Chlamydomonas)

External Links

Gene Match (Ensembl Protein ID: ENSP00000312778, Human)

Protein Percentage 95.11%
CDS Percentage 93.61%
Ka/Ks Ratio 0.0906 (Ka = 0.0231, Ks = 0.2544)

Ift80 ENSMUSG00000027778 (Mouse)

Gene Details

intraflagellar transport 80

External Links

Gene Match (Ensembl Protein ID: ENSMUSP00000103442, Mouse)

Protein Percentage 94.59%
CDS Percentage 87.64%
Ka/Ks Ratio 0.04181 (Ka = 0.0266, Ks = 0.6366)

Ift80 ENSRNOG00000009808 (Rat)

Gene Details

intraflagellar transport 80 homolog (Chlamydomonas) (Ift80), mRNA

External Links

Gene Match (Ensembl Protein ID: ENSRNOP00000013216, Rat)

Protein Percentage 94.59%
CDS Percentage 88.55%
Ka/Ks Ratio 0.04604 (Ka = 0.0265, Ks = 0.5751)

Genome Location

Sequence Coding sequence

Length: 2334 bp    Location: 38119674..38003904   Strand: -
Raw sequence   
>XM_004834531.1
ATGAGACTGAAGATATCTCTTTTAAAAGAACCAAGGCATCAAGAATTGGTAAGCTGTGTGGGCTGGACTACTGCTGAAGAACTGTATTCATGTAGTGATGATCACCAGATAGTGAAGTGGAACTTGTTAACCAGTGAAACAAGTCAAATAGTAAAGCTACCTGATGATATTTACCCAATAGATCTTCACTGGTTTCCAAAAAGTTTAGGCATAAAGAAACAGACTCAAGCAGAAAGCTTTGTTCTCACAAGTTCAGATGGTAAATTTCACCTAATTTCTAAGTTAGGAAGAGTGGAAAAAAGTGTAGAAGCTCACTGTGGAGCAGTACTTGCAGGAAGATGGAATTATGAAGGAACAGCATTAGTTACAGTTGGAGAAGATGGACAAATAAAAATTTGGTCAAAGACTGGGATGCTTAGATCAACTTTAGCTCAGCAAGGAACACCAGTGTATTCAGTAGCATGGGGCCCTGATTCAGAAAAAGTTCTTTACACAGCAGGCAAGCAGCTGATTATTAAACCTCTTCAACCAAATGCTAAAGTTTTACAGTGGAAAGCTCATGATGGTATTATTTTGAAAGTTGATTGGAACTCAGTCAATGACCTTATTTTATCTGCTGGTGAAGATTGTAAATATAAGGTATGGGATAGTTACGGCCGTCCATTGTACAGTTCACAACCTCATGAGCATCCTATTACCTCAGTTGCCTGGGCTCCAGATGGAGAATTGTTTGCTGTTGGATCATTTCATACTTTACGCTTGTGTGATAAAACTGGGTGGTCATATGCTTTAGAAAAACCCAACACTGGAAGCATATTTAATATTGCGTGGTCAGTTGATGGCACTCAGATTGCTGGAGCCTGTGGAAATGGGCATGTTGTTTTTGGACATGTGGTGGAGCAACGTTGGGAGTGGAAAAATTTTCAAGTGACATTAACTAAAAGAAGAACTATGCAGGTTCGGAATGTTCTTAATGATGCAGTGGACATATTGGAATTTCGTGATAGAGTCATTAAAGCATCTTTGAACTGTGCACACTTAGTTGTTTCAACATCTCTTCAATGTTACGTGTTCTCTACGAAGAACTGGAATACACCACTTATATTTGATCTCAAAGAAGGAACTGTTAGTTTAATTCTACAGGCAGAAAGACATTTTCTTCTTGTAGATGGTGGTGGTATCTATTTATATTCTTATGAAGGGCGCTTCATTTCTTCTCCAAAATTTCCTGGAATGAGAACAGATATTTTGAATGCACAGACTGTGTCTCTAAGTAATGATACTATAGCAATAAAAGACAAAGCTGATGAGAAAATTATCTTTCTCTTTGAGGCATCAACTGGAAAACCACTAGGTGATGGGAAACATCTTTCTCATAAGATTGAAATTTTGGAAATTGCTCTGGATCAAAAAGGACTTACCAATGATAGAAAAATTGCTTTCATTGATAAAAATAGAGATCTCTATATCACTTCAGTAAAACGATTTGGGAAGGAAGAACAAATTATCAAACTTGGAACAATGGTGCATACTGTGGCCTGGTGTGATACATGCAATATCCTTTGTGGACTTCAGGATACTCGATTTACAGTGTGGTATTACCCTAATACAGTTTATGTGGACAGAGACATTTTGCCTAAAACACTGTCTGAAAGGGATGCAAGTGAATTTAGTAAAAATCCCCATATTATGAGTTTTGTTGGAAATCAGGTAACTATAAGAAGAGCAGATGGCTCCCTGGTACATATCAGCATATCACCATATCCCGCTATTCTCCACGAATACGTAGGCAGTTCAAAATGGGAGGATGCTGTGAGACTTTGTCGTTTTGTAAAGGAGCAAACCATGTGGGCTTGCCTAGCTGCTATGGCAATTGCTAATCGAGATATGATTACTGCAGAAATAGCCTATGCAGCCATAGGTGAAATTGACAAAGTCCAATACATCAATTCTATAAAAGATCTTCCATCTAAAGAATCAAAAATGGCCCACATACTACTGTTTAGTGGGAACATACAGGAGGCTGAAATAATTCTTCTTCAGGCTGGCCTTGTTTATCAAGCAATCCAGATCAATATTAATCTGTATAACTGGGAAAGAGCACTGGAATTGGCTGTAAAATACAAAACACATGTTGATACGGTTCTTGCTTACCGTCAAAAGTTTTTAGAGACATTTGGTAAACAGGAAACTAATGAACGATATTTGCAATATGCAGAAGGTCTCCAAATAGATTGGGAGAAAATCAAAGTCAAAATTCAGATGGAAATTACTAAAGAACGAGAGCGATCATCAAGCAGCCAATCCAACAAGAATATAAGTCTGAAGCACTAA

Related Sequences

XP_004834588.1 Protein

Ift80 PREDICTED: intraflagellar transport protein 80 homolog isoform X1 [Heterocephalus glaber]

Length: 777 aa      View alignments
>XP_004834588.1
MRLKISLLKEPRHQELVSCVGWTTAEELYSCSDDHQIVKWNLLTSETSQIVKLPDDIYPIDLHWFPKSLGIKKQTQAESFVLTSSDGKFHLISKLGRVEKSVEAHCGAVLAGRWNYEGTALVTVGEDGQIKIWSKTGMLRSTLAQQGTPVYSVAWGPDSEKVLYTAGKQLIIKPLQPNAKVLQWKAHDGIILKVDWNSVNDLILSAGEDCKYKVWDSYGRPLYSSQPHEHPITSVAWAPDGELFAVGSFHTLRLCDKTGWSYALEKPNTGSIFNIAWSVDGTQIAGACGNGHVVFGHVVEQRWEWKNFQVTLTKRRTMQVRNVLNDAVDILEFRDRVIKASLNCAHLVVSTSLQCYVFSTKNWNTPLIFDLKEGTVSLILQAERHFLLVDGGGIYLYSYEGRFISSPKFPGMRTDILNAQTVSLSNDTIAIKDKADEKIIFLFEASTGKPLGDGKHLSHKIEILEIALDQKGLTNDRKIAFIDKNRDLYITSVKRFGKEEQIIKLGTMVHTVAWCDTCNILCGLQDTRFTVWYYPNTVYVDRDILPKTLSERDASEFSKNPHIMSFVGNQVTIRRADGSLVHISISPYPAILHEYVGSSKWEDAVRLCRFVKEQTMWACLAAMAIANRDMITAEIAYAAIGEIDKVQYINSIKDLPSKESKMAHILLFSGNIQEAEIILLQAGLVYQAIQININLYNWERALELAVKYKTHVDTVLAYRQKFLETFGKQETNERYLQYAEGLQIDWEKIKVKIQMEITKERERSSSSQSNKNISLKH