Details from NCBI annotation

Gene Symbol Clrn1
Gene Name clarin 1, transcript variant X1
Entrez Gene ID 101700311

Database interlinks

Part of NW_004624730.1 (Scaffold)

For more information consult the page for NW_004624730.1 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible homologs of the naked mole-rat gene and compared to it.

ENSCPOG00000001775 (Guinea pig)

Gene Details

Uncharacterized protein

External Links

Gene Match (Ensembl Protein ID: ENSCPOP00000001606, Guinea pig)

Protein Percentage 96.55%
CDS Percentage 93.82%
Ka/Ks Ratio 0.09078 (Ka = 0.0185, Ks = 0.2038)

Clrn1 ENSMUSG00000043850 (Mouse)

Gene Details

clarin 1

External Links

Gene Match (Ensembl Protein ID: ENSMUSP00000052254, Mouse)

Protein Percentage 91.81%
CDS Percentage 87.36%
Ka/Ks Ratio 0.08407 (Ka = 0.0434, Ks = 0.5163)

Clrn1 ENSRNOG00000042477 (Rat)

Gene Details

clarin 1 (Clrn1), mRNA

External Links

Gene Match (Ensembl Protein ID: ENSRNOP00000060407, Rat)

Protein Percentage 93.53%
CDS Percentage 87.64%
Ka/Ks Ratio 0.06315 (Ka = 0.0347, Ks = 0.5495)

Genome Location

Sequence Coding sequence

Length: 699 bp    Location: 28412282..28373231   Strand: -
>XM_004834453.1
ATGCCAAACCAACAGAAGAAAATCATTTTTTGCATGGCTGGGGTGTTAAGCTTTGTGTGTGCTCTCGGAGTTGTGACAGCTCTGGGGACACCATTGTGGATTAAAGCCACCATCCTCTGCAAAACAGGGGCTCTGCTTGTCAATGCCTCAGGACAGGAGCTGGACAAGTTCATGGGAGAGATGCAGTATGGGCTTTTCCACGGAGAGGGTGTAAGGCAGTGCGGGTTAGGAGCAAGGCCCTTTCGGTTCTCATTTTTCCCAGATTTGCTGCAAGCAATTCCAGTGAGCATCCACGTCAATGTCATTCTCTTCTCCACGATCCTTGTTGTTCTAACCATGGTGGGAACAGCCTTCTTCATGTACAATGCTTTTGGCAAACCCTTTGAAACACTACATGGTCCTCTAGGCTTGTATCTTTTGAGTTTCATTTCAGGCTCCTGCGGCTGTCTTGTCATGATTTTGTTTGCCTCTGAAGTGAAAATCCACCACCTCTCAGAAAAAATTGCGAATTATAAAGAAGGGACTTATGCATACAAAACACAAAATGAAAAATACACCACCTCCTTCTGGGTTGTTTTCATTTGCTTTTTTGTTCATTTTCTGAATGGGCTTCTAATACGACTTGCTGGATTTCAGTTCCCTTTTGTAAAATCTAAAGATACAGAGACAACAAATGTAGCTGAAGATTTAATGTATTGA

Related Sequences

XP_004834510.1 Protein

Clrn1 PREDICTED: clarin-1 isoform X1 [Heterocephalus glaber]

Length: 232 aa     
>XP_004834510.1
MPNQQKKIIFCMAGVLSFVCALGVVTALGTPLWIKATILCKTGALLVNASGQELDKFMGEMQYGLFHGEGVRQCGLGARPFRFSFFPDLLQAIPVSIHVNVILFSTILVVLTMVGTAFFMYNAFGKPFETLHGPLGLYLLSFISGSCGCLVMILFASEVKIHHLSEKIANYKEGTYAYKTQNEKYTTSFWVVFICFFVHFLNGLLIRLAGFQFPFVKSKDTETTNVAEDLMY