Details from NCBI annotation

Gene Symbol Pls1
Gene Name plastin 1, transcript variant X3
Entrez Gene ID 101702339

Database interlinks

Part of NW_004624730.1 (Scaffold)

For more information consult the page for NW_004624730.1 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible homologs of the naked mole-rat gene and compared to it.

PLS1 ENSCPOG00000003196 (Guinea pig)

Gene Details

plastin 1

External Links

Gene Match (Ensembl Protein ID: ENSCPOP00000002895, Guinea pig)

Protein Percentage 97.78%
CDS Percentage 96.46%
Ka/Ks Ratio 0.09328 (Ka = 0.011, Ks = 0.1183)

PLS1 ENSG00000120756 (Human)

Gene Details

plastin 1

External Links

Gene Match (Ensembl Protein ID: ENSP00000336831, Human)

Protein Percentage 95.87%
CDS Percentage 94.12%
Ka/Ks Ratio 0.10772 (Ka = 0.021, Ks = 0.1953)

Pls1 ENSMUSG00000049493 (Mouse)

Gene Details

plastin 1 (I-isoform)

External Links

Gene Match (Ensembl Protein ID: ENSMUSP00000091317, Mouse)

Protein Percentage 95.56%
CDS Percentage 87.51%
Ka/Ks Ratio 0.03514 (Ka = 0.0226, Ks = 0.6436)

Pls1 ENSRNOG00000009945 (Rat)

Gene Details

plastin 1 (Pls1), mRNA

External Links

Gene Match (Ensembl Protein ID: ENSRNOP00000013209, Rat)

Protein Percentage 94.38%
CDS Percentage 86.61%
Ka/Ks Ratio 0.04327 (Ka = 0.0285, Ks = 0.658)

Genome Location

Sequence Coding sequence

Length: 1893 bp    Location: 19164649..19302222   Strand: +
>XM_004834382.1
ATGGAAAATAGTACCACTACCATTTCTCGGGAGGAGCTTGAAGAACTACAAGAAGCATTTAATAAAATAGATATTGACAACAGTGGATATGTGAGTGACTATGAACTTCAGGACCTATTTAAGGAAGCAAGCCTTCCTCTTCCTGGCTATAAGGTGCGCGAGATTGTGGAGAAAATTCTAGTAGTTGCTGACAACAACAAAGATGGCAAAATCAGTTTTGAAGAGTTTGTGTCACTAATGCAAGAGTTAAAAAGCAAAGATATCAGCAAAACATTCCGAAAAATAATTAACAAGAGAGAAGGAATTACTGCTATTGGAGGAACTTCATCCATTTCCAGTGAGGGCACACAGCATTCTTATTCAGAGGAAGAAAAAGTGGCTTTTGTTAACTGGATAAACAAAGCCCTAGAGAGTGACCCTGACTGTAAGCATCTTATACCCATGAATCCCAATGATGGCAGTCTGTTCAGATCACTTGCAGATGGCATCCTTCTTTGCAAAATGATCAACTTATCTGAACCAGATACAATTGATGAAAGAGCCATTAATAAGAAGAAGCTCACTCCTTTTACTGTTTCTGAAAATTTAAACCTAGCCCTGAATTCTGCCTCAGCCATTGGTTGTACAGTGGTCAACATTGGTGCACAGGATCTTAAAGAAGGAAAGCCTCACTTGGTCTTGGGTCTTCTCTGGCAGATCATCAAAGTTGGTCTTTTTGCTGATATTGAGATTTCTAGGAATGAAGCTTTGATTGCATTGCTAAATGAAGGTGAAGAACTAGAGGAACTGATGAAGCTTTCTCCTGAGGAATTACTGCTGCGATGGGTGAACTACCATCTGACCAACGCAGGATGGAATACCATCAACAACTTCAGCCAGGACATTAAGGATTCAAGAGCCTATTTTCATCTGCTTAATCAGATTGCCCCTAAGAGTGACCGAGAGGATGGACCTGCCATTGCCATTGACCTTTCAGGATTTAATGAGAAAAATGACCTGAAGCGTGCTGGATTCATGCTTCAAGAAGCAGATAAACTAGGCTGCAGACAGTTTGTTACTCCTGCAGATGTGGTTTCAGGAAATCCTAAACTTAATTTAGCCTTTGTAGCTAATCTTTTTAACACATACCCCTGCCTACACAAGCCTGATAATAATGAAATTGATATTAATTTATTGGAAGGAGAGAGCAAAGAAGAGAGGACATTTCGGAACTGGATGAATTCCTTGGGAGTCAATCCATACATTAATCATTTGTATGGTGACCTTGAAGATGCTTTAGTGATCTTTCAGCTCTATGAAATGATTCGAGTGCCAGTCAACTGGAACCAGGTCAACAAACCTCCTTATCCTGCTCTTGGAGGGAATATGAAGAAGATTGAGAACTGTAACTATGCTGTAGAGCTTGGAAAGAATAAAGCCAAATTCTCCTTGGTTGGCATTGCTGGTCAGGACCTAAATGAAGGGAATTCAACACTTACTCTGGCACTGGTATGGCAGCTGATGAGAAGGTACACATTGAATGTGTTATCAGATCTTGGAGAGGGAGAAAAAGTAAATGATGAAATTATTATTAAATGGGTCAATCAGACTCTTAAAAATGCAAACAAAAATACTTCTATTTCCAGCTTCAAGGATAAATCTATTAGCACGAGTTTACCTGTCCTAGATTTAATAGATGCCATTGCACCAAATGCAGTTCGTCAAGAAATGATCAAGAGAGAAAACCTTTCTGATGAAGACAAACTGAACAATGCTAAATATGCCATTTCAGTTGCTCGAAAGATTGGTGCCCGGATATATGCATTACCTGATGATCTCGTAGAAGTAAAACCAAAGATGGTTATGACGGTGTTTGCATGCTTAATGGGAAAAGGACTGAACAGAATAAAATAA

Related Sequences

XP_004834439.1 Protein

Pls1 PREDICTED: plastin-1 isoform X3 [Heterocephalus glaber]

Length: 630 aa      View alignments
>XP_004834439.1
MENSTTTISREELEELQEAFNKIDIDNSGYVSDYELQDLFKEASLPLPGYKVREIVEKILVVADNNKDGKISFEEFVSLMQELKSKDISKTFRKIINKREGITAIGGTSSISSEGTQHSYSEEEKVAFVNWINKALESDPDCKHLIPMNPNDGSLFRSLADGILLCKMINLSEPDTIDERAINKKKLTPFTVSENLNLALNSASAIGCTVVNIGAQDLKEGKPHLVLGLLWQIIKVGLFADIEISRNEALIALLNEGEELEELMKLSPEELLLRWVNYHLTNAGWNTINNFSQDIKDSRAYFHLLNQIAPKSDREDGPAIAIDLSGFNEKNDLKRAGFMLQEADKLGCRQFVTPADVVSGNPKLNLAFVANLFNTYPCLHKPDNNEIDINLLEGESKEERTFRNWMNSLGVNPYINHLYGDLEDALVIFQLYEMIRVPVNWNQVNKPPYPALGGNMKKIENCNYAVELGKNKAKFSLVGIAGQDLNEGNSTLTLALVWQLMRRYTLNVLSDLGEGEKVNDEIIIKWVNQTLKNANKNTSISSFKDKSISTSLPVLDLIDAIAPNAVRQEMIKRENLSDEDKLNNAKYAISVARKIGARIYALPDDLVEVKPKMVMTVFACLMGKGLNRIK