Sequence details NCBI ID: XM_004834378.1 (Coding sequence)   Best Hit

Details from NCBI annotation

Gene Symbol Xrn1
Gene Name 5'-3' exoribonuclease 1, transcript variant X3
Entrez Gene ID 101701152

Database interlinks

Part of NW_004624730.1 (Scaffold)

For more information consult the page for NW_004624730.1 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible homologs of the naked mole-rat gene and compared to it.

XRN1 ENSCPOG00000003458 (Guinea pig)

Gene Details

5'-3' exoribonuclease 1

External Links

Gene Match (Ensembl Protein ID: ENSCPOP00000003123, Guinea pig)

Protein Percentage 93.41%
CDS Percentage 93.83%
Ka/Ks Ratio 0.18783 (Ka = 0.0332, Ks = 0.1768)

XRN1 ENSG00000114127 (Human)

Gene Details

5'-3' exoribonuclease 1

External Links

Gene Match (Ensembl Protein ID: ENSP00000264951, Human)

Protein Percentage 91.91%
CDS Percentage 91.71%
Ka/Ks Ratio 0.14627 (Ka = 0.0398, Ks = 0.2719)

Xrn1 ENSMUSG00000032410 (Mouse)

Gene Details

5'-3' exoribonuclease 1

External Links

Gene Match (Ensembl Protein ID: ENSMUSP00000034981, Mouse)

Protein Percentage 88.07%
CDS Percentage 87.54%
Ka/Ks Ratio 0.14486 (Ka = 0.0641, Ks = 0.4422)

Xrn1 ENSRNOG00000042951 (Rat)

Gene Details

Protein LOC100911537

External Links

Gene Match (Ensembl Protein ID: ENSRNOP00000014481, Rat)

Protein Percentage 88.66%
CDS Percentage 87.77%
Ka/Ks Ratio 0.14338 (Ka = 0.0621, Ks = 0.4329)

Genome Location

Sequence Coding sequence

Length: 5091 bp    Location: 19020833..18906599   Strand: -
Raw sequence   
>XM_004834378.1
ATGGGAGTCCCCAAGTTTTACCGGTGGATCTCGGAGCGGTATCCTTGCCTCAGCGAAGTAGTGAAAGAGCATCAGATTCCTGAATTTGACAACTTGTACCTGGATATGAATGGAATTATACATCAGTGCTCTCATCCTAATGATGATGATGTCCACTTTAGAATTTCAGATGACAAAATCTTTACTGACATTTTTCACTACTTGGAGGTGTTGTTTCGCATTATTAAACCTAGGAAAGTGTTCTTTATGGCTGTTGATGGTGTAGCTCCTCGAGCAAAAATGAATCAACAGCGTGGGAGGCGTTTTAGGTCAGCCAAGGAGGCAGAAGACAAAATTAAAAAGGCAATTGAAAAGGGGGAAACTCTTCCTACAGAGGCCAGGTTTGATTCCAACTGTATTACACCAGGGACTGAATTCATGGCCAGGTTACATGAACATCTGAAGTATTTTGTAAATGTGAAAATTTCCACAGACAAGTCATGGCAAGGAGTTACCATCTACTTCTCAGGCCATGAGACTCCCGGAGAAGGAGAACATAAAATCATGGAATTTATCAGATCTGAAAAAGCAAAGCCAGATCATGACCCAAACACCAGACACTGTCTTTATGGTCTAGATGCTGACTTGATCATGCTTGGATTAACAAGTCACGAGGCACATTTTTCTCTTTTAAGAGAAGAAGTTCGATTTGGTGGCAAAAAAACACAGAGGGTGTGTGCACCAGAAGAAACCACATTTCACCTCCTACATTTGTCATTAATGAGAGAGTATATTGACTACGAGTTTTCAGTATTAAAAGAAAATATTACATTTAAATATGATATTGAAAGAATTATAGATGATTGGATTTTGATGGGATTTCTTGTTGGCAATGATTTTATCCCTCATCTACCTCATTTACATATTAATCATGATGCGCTGCCTCTTCTTTATGGAACATATATTACCATCCTGCCCGAACTTGGAGGTTATATTAATGAAAGTGGACATCTCAATTTACCTCGATTTGAAAAATACCTTGTGAAACTATCTGATTTTGATCGGGAGCACTTCAGTGAAGTTTTTGTGGACCTAAAGTGGTTTGAAAGCAAAGTTGGTAACAAGTATCTCAATGAAGCAGCAGGTATCGCAGCTGAAGAAGCCAAGAACTACAAGGAAAAGAAAAAATCAAAGGGCCAGGAAAATTCTGTATGTTGGGCTGCTTTAGACAAAAGTGAAGGTGAAATGGTAGTTTCTAAGGATAATTTAGAAGATGAGACTGAAGATGATGATCTATTTGAAACCGAGTTTAGACAATACAAAAGAACATATTACATGACGAAGATGGGGGTTGATGTGGTATCTGATGACTTTCTGGCTGATCAAGCTGTATGTTATGTTCAAGCGATACAGTGGATTTTGCACTATTACTATCATGGTGTTCAGTCCTGGAGTTGGTATTATCCCTATCATTATGCACCTTTCCTATCTGATATCCGAAATATCAGTACACTCAAAATCCATTTTGAACTAGGAAAACCTTTTAAGCCATTTGAGCAGCTTCTTGCTGTACTTCCAGCAGCTAGCAAAAATTTGCTTCCTGTATGCTACCAGCATTTGATGACCAGTGAAGACTCACCGATTATAGAGTATTATCCACCTGATTTTAAAACTGATCTAAATGGAAAACAACAGGAATGGGAAGCTGTTGTATTAATACCTTTTATTGATGAGAAGCGATTGTTGGAAGCCATGGAGACATGTAACCACTCCCTCAAAGAGGAAGAGAGGAAGAGAAACCGACATAGTGAGTGCCTGATGTGCTGGTATGATAAAGACACAGAGTTTATCTACCCTTCTCCATGGCCAGAAAAATTCCCTGCCATAGAACGATGCTATACACGGTACAAAATAATATCACTAGATGCTTGGCATGTAGATATAAGTAAGAACAAAATAACCAGAGTTGACCAGAAGGCATTGTATTTCTGTGGATTCCCTACTTTGAAACACATCAAACATAAATTTTTTTTGAAGAAAAGTGGTGTTCAAGTATTCCAGCAAAGCAGTCGTGGAGAAAACATGATGTTGGAAATCTTAGTGAATGCAGAATCTGATGAACTTAGTATAGAAAATGTAGCTTCATCAGTGCTTGGAAAGTCTGTCTTTGTTAATTGGCCTCACCTTGAAGAAGCTAGAGTTGTTGCTGTATCAGATGGTGAAACTAAATTTTACTTGGAAGAACCTCCAGGAACACAGAAGCTTTATTTGGGAAGAACTGCTCCACCATCTAAAGTGATACATCTTGGCGATAAAGAGCAATCTAATTGGACAAAAGAGGTACAAGGAATATCAGAACACTACTTGAGAAGAAAAGGAATAATAATAAATGAAACATCTATGGTTGTATATGCTCAGTTACTCACAGGTCGTAAATATCAGATAAATCATAATGGTGAAGTTCGTCTGGAAAAGCAGTGGTCAAAACAAATTCTTCCTTTTGTCTATCAAACCATTGTCAAAGACATCCAAGCTTTCGACTCTCGTTTCTCCAGTATCAAAACATTGGATGATTTGTTTCCTCCTGGAAGTGTGGTGTTTATGCTGGGGACTCCTTATTATGGCTGCACAGGAGAAGTTCAAGTTTCAGGTGATGTGATCACAGAAGGCAGAATTCGTGTGGTTTTCAGCATTCCATGTGAACCCAATCTTGATGCTTTAATACAGAACCAGCATAAATATTCTATAAAGTACAACCCAGGATATGTATTGGCCAGTCGCCTTGGAGTGAGTGGATACCTTGTTTCAAGGTTTACAGGAAGTATTTTTATTGGAAGAGGATCTAGGAGAAACCCTCATGGAGACCATAAAGCAAATGTGGGTTTAAATCTCAAATTCAACAAAAAAAATGAGGAGGTACCTGGATATACTAAGAAAGTTGGAAGTGAATGGATGTACTCATCTGCAGCAGAACAACTTCTTGCAGAATATTTAGAGAGAGCTCCAGAACTGTTTAGTTATATAGCCAAAAATAGCCAAGAGGATGTGTTCTATGAAGATGACATTTGGCCTGGAGAAAATGAGAATGGTGCTGAGAAAGTTCAAGAAATTATTACTTGGCTAAAAGGACATCCTGTCAGTACTTTGTCTCGTTCATCTTGTGATTTACAAATTCTGGATGCAGCTATTGTTGAGAAAATTGAGGAAGAAGTTGATAAATGCAAGCAAAGAAAAAATAACAAGAAAGTACGGGTGACAGTAAAGCCCCACTTGCTGTACAGACCTTTAGAACAACAACATGGAGTCATTCCTGATCGAGATGCAGAATTTCGTCTCTTTGACCGTGTAGTGAACGTGAGAGAGAATTTTTCAGTTCCAGTTGGCCTTCGGGGCACCATCATAGGAATTAAAGGGGCTAATAGAGAAGCTGATGTACTATTTGAAGTATTGTTTGATGAAGAATTTCCTGGAGGATTAACAATAAGGTGCTCACCTGGAAAAGGTTATCGATTGCCAACAAGTGCCTTAGTGAACCTTTCTCATGGAAGTCGCTCGGAAACTGGAAATCAGAAGTTGACAGCCATTGTGAAACCACAGCCAGCTGTAAATCAATATAGCTCAAATTCATCAGTTTCTCCTGGCCATCTCGGAGGCCTCAACCATTCCTCTCAATCACTTTTTGTTCCTACTCAAGTATCTACTAAAGCTGATGATGAATTTTGCAACATTTGGCAATCCTTACAAGGGTCCAGAAAAATTCAGCACTTTCAGCCATCTATACAAGAGAAGGGTCCAGTTCTACCTCAAGAAATAAGTCAAGTAATTCAACAGCATAAATCTGGCTTTTATGACAACAGTGTTAAGTATCAGCAAAGAAAACATGAACCTCACCGAAAATTTAAAGAAGAGTGTAAGAGTCCTAAAGCTGAGTGTCGGTCACAAAAAATGTCCAGTAAGCAGCCTAACTCTGGAATTGAGAACTTTTTAGCATCCTTGAATATCTCTAAAGAAAATGAATTACCATCATCTCATCATGGAGAGCCTCCAAATGAAGAGCATTTGTCTCCACAGTCATTTGCTATGGGAACACGAATGCTTAAAGAAATTCTAAAAATTGATGGTTCTGACACAGTGGACCCTAAGAATGAAATGAAACGATATGGAAATGAAGTTACTGTTTCTTCTAATAGAAGAGATGAATATGGACTATCCTCACAGCCTAAACAAAATAAGAAATTAGCGCCTTATATGAACAAGCTTCACCGTGCCAATGAATACCACAGTATTCCGTCTGTGGACAGTACGTGCTGGCCTATTCCCAGCCAGGTCTCTTCTGTGTCCACACCAGTAACTGAACTTGCTCGAATTTGTTCCCTTGTTGGGATGCCACAACCAGATTTCTCCTTTCTGAGAACACCTCAGACAATGACAGTTTGCCAGGTAAAATTATCAAATGGTTTACTGGTGCATGGGCCACAGTGCCGCTCTGAAAATGAAGCCAAGGAGAAAGCTGCACTTTTTGCTTTACAACAACTGGGCTCCTTAGGAGTGAATTTTCCTTTGCCTCCACCACTATTTCCAAATTATCCTCCTGCTATACCACCTGGAACCATTCCTCCAGTTTTTCCCCAACCTCCTGCTAATATAATGCCTTCATCACCTCGTCTCTTTGGCTCAGTTCCGTGGGGTCCACCATTGCCAGTTCCTGGAAAGCCCTTCCATCAGACTCTGTACCCTGGGGCTGTGCCCACAGCTGGAGGAATAATGCCAGGTGGTGCGCACAATCAGTTCATACCTTTGCAGGTCATGAAAAAAAGAGTTGCAAACAAAAAGAACTTTGAGAATAAAGAAACCCAGAGCTCTTCTCAAGCCACCCCAACACAGACTAGCAAGCCAGGGTCTTCTGATATTGCCAAAGTGACTGCACAGGAAAGTTCATCAGCCCCTTTGAACTCCTCTCAGGTTGCTCAGGCTGCATCTTCTTTTCAAGGTGAAACTGCCTCCCACGGCAGCCATAATGCACCTCACCAGAAGGCAGCACCAAGCTCTTCTTCAAGAAGAAGATCAAGGAAACTGGCTGTCAATTTTGGCGTTTCTAAACCTTCTGAATAA

Related Sequences

XP_004834435.1 Protein

Xrn1 PREDICTED: 5'-3' exoribonuclease 1 isoform X3 [Heterocephalus glaber]

Length: 1696 aa      View alignments
>XP_004834435.1
MGVPKFYRWISERYPCLSEVVKEHQIPEFDNLYLDMNGIIHQCSHPNDDDVHFRISDDKIFTDIFHYLEVLFRIIKPRKVFFMAVDGVAPRAKMNQQRGRRFRSAKEAEDKIKKAIEKGETLPTEARFDSNCITPGTEFMARLHEHLKYFVNVKISTDKSWQGVTIYFSGHETPGEGEHKIMEFIRSEKAKPDHDPNTRHCLYGLDADLIMLGLTSHEAHFSLLREEVRFGGKKTQRVCAPEETTFHLLHLSLMREYIDYEFSVLKENITFKYDIERIIDDWILMGFLVGNDFIPHLPHLHINHDALPLLYGTYITILPELGGYINESGHLNLPRFEKYLVKLSDFDREHFSEVFVDLKWFESKVGNKYLNEAAGIAAEEAKNYKEKKKSKGQENSVCWAALDKSEGEMVVSKDNLEDETEDDDLFETEFRQYKRTYYMTKMGVDVVSDDFLADQAVCYVQAIQWILHYYYHGVQSWSWYYPYHYAPFLSDIRNISTLKIHFELGKPFKPFEQLLAVLPAASKNLLPVCYQHLMTSEDSPIIEYYPPDFKTDLNGKQQEWEAVVLIPFIDEKRLLEAMETCNHSLKEEERKRNRHSECLMCWYDKDTEFIYPSPWPEKFPAIERCYTRYKIISLDAWHVDISKNKITRVDQKALYFCGFPTLKHIKHKFFLKKSGVQVFQQSSRGENMMLEILVNAESDELSIENVASSVLGKSVFVNWPHLEEARVVAVSDGETKFYLEEPPGTQKLYLGRTAPPSKVIHLGDKEQSNWTKEVQGISEHYLRRKGIIINETSMVVYAQLLTGRKYQINHNGEVRLEKQWSKQILPFVYQTIVKDIQAFDSRFSSIKTLDDLFPPGSVVFMLGTPYYGCTGEVQVSGDVITEGRIRVVFSIPCEPNLDALIQNQHKYSIKYNPGYVLASRLGVSGYLVSRFTGSIFIGRGSRRNPHGDHKANVGLNLKFNKKNEEVPGYTKKVGSEWMYSSAAEQLLAEYLERAPELFSYIAKNSQEDVFYEDDIWPGENENGAEKVQEIITWLKGHPVSTLSRSSCDLQILDAAIVEKIEEEVDKCKQRKNNKKVRVTVKPHLLYRPLEQQHGVIPDRDAEFRLFDRVVNVRENFSVPVGLRGTIIGIKGANREADVLFEVLFDEEFPGGLTIRCSPGKGYRLPTSALVNLSHGSRSETGNQKLTAIVKPQPAVNQYSSNSSVSPGHLGGLNHSSQSLFVPTQVSTKADDEFCNIWQSLQGSRKIQHFQPSIQEKGPVLPQEISQVIQQHKSGFYDNSVKYQQRKHEPHRKFKEECKSPKAECRSQKMSSKQPNSGIENFLASLNISKENELPSSHHGEPPNEEHLSPQSFAMGTRMLKEILKIDGSDTVDPKNEMKRYGNEVTVSSNRRDEYGLSSQPKQNKKLAPYMNKLHRANEYHSIPSVDSTCWPIPSQVSSVSTPVTELARICSLVGMPQPDFSFLRTPQTMTVCQVKLSNGLLVHGPQCRSENEAKEKAALFALQQLGSLGVNFPLPPPLFPNYPPAIPPGTIPPVFPQPPANIMPSSPRLFGSVPWGPPLPVPGKPFHQTLYPGAVPTAGGIMPGGAHNQFIPLQVMKKRVANKKNFENKETQSSSQATPTQTSKPGSSDIAKVTAQESSSAPLNSSQVAQAASSFQGETASHGSHNAPHQKAAPSSSSRRRSRKLAVNFGVSKPSE