Details from NCBI annotation

Gene Symbol Trim42
Gene Name tripartite motif containing 42
Entrez Gene ID 101721515

Database interlinks

Part of NW_004624730.1 (Scaffold)

For more information consult the page for NW_004624730.1 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible homologs of the naked mole-rat gene and compared to it.

TRIM42 ENSCPOG00000012108 (Guinea pig)

Gene Details

tripartite motif containing 42

External Links

Gene Match (Ensembl Protein ID: ENSCPOP00000010890, Guinea pig)

Protein Percentage 87.0%
CDS Percentage 88.84%
Ka/Ks Ratio 0.16368 (Ka = 0.0682, Ks = 0.4166)

TRIM42 ENSG00000155890 (Human)

Gene Details

tripartite motif containing 42

External Links

Gene Match (Ensembl Protein ID: ENSP00000286349, Human)

Protein Percentage 85.06%
CDS Percentage 87.32%
Ka/Ks Ratio 0.13668 (Ka = 0.073, Ks = 0.534)

Trim42 ENSMUSG00000032451 (Mouse)

Gene Details

tripartite motif-containing 42

External Links

Gene Match (Ensembl Protein ID: ENSMUSP00000035026, Mouse)

Protein Percentage 85.48%
CDS Percentage 84.69%
Ka/Ks Ratio 0.08055 (Ka = 0.0713, Ks = 0.8857)

Trim42 ENSRNOG00000048975 (Rat)

Gene Details

tripartite motif-containing 42 (Trim42), mRNA

External Links

Gene Match (Ensembl Protein ID: ENSRNOP00000066659, Rat)

Protein Percentage 85.48%
CDS Percentage 84.09%
Ka/Ks Ratio 0.07656 (Ka = 0.0714, Ks = 0.932)

Genome Location

Sequence Coding sequence

Length: 2172 bp    Location: 17299923..17330802   Strand: +
>XM_004834346.1
ATGGAGACTGCTATGTGTGTTTGCTCCCCATGCTGTACATGGCAAAGATGTTGTCCTCATTTGTGCTCCTGCCTGTGCTGCAAGTTCATCTTCACCTCGGAACGGAACTGCACCTGCTTCCCCTGCCCTTACAAGGATGAGCGTAACTGCCAGTTCTGCCATTGTACCTGTGCAGAGAACCCCAACTGCCACTGGTGCTGCTGCTCCTGGGCCAATGATCCCAACTGCAAGTGCTGCTGCACGGCCAGCAGTAACATCACGTGCTACTACTACGAGAGCCGCTGCTGCCGCAATGCCACCATCATATTCCACAAGGGCTGCCTCAAGAGCATCCGCACCTCGTCCAAGACCACTCTGCATGTGGGGAGCAGCGATACTCAGGTGGATAACTTGAAGTCGATACCAGCGAACAGCCATCTGGTCGACCACCTCAGCTGCCCCATGTGCAACCGGCTGCGCCTGCACTCGTTTATGCTTCCCTGCAACCACAGCCTGTGCGAAAAGTGCCTGCGGCGCTTGCAAAAACAGGCCGAAGTCACCGAGAATTTTTTCATCCTCATTTGCCCGGTTTGCAACCGTTCGCACTGCATGCCCTATACCCACAAGATGCGGCTGCCCGAGAACTACCTGCGCGGCCGCCTCACCAAGCGCTACATGCAGGAGCACGGCTTCCTGAAGTGGCGCTTCGACCGCTCCTCTGGGCCCATCCTCTGCCAGGTCTGCCGCAACCAGCGCATCGCCTACAAGCGCTGCATCACCTGCCGCCTCAACCTGTGCAACGAGTGCCTCAAGGCCTTCCACTCGGACATCGCCATGCAGGACCACGTCTTTGTGGACACCAGCGCCGAGGACCAGGACGAGAAGATGTGCATCCACCACCCGTCCAGCCGCATCAGCGAGTACTGCCGCAGCGACAACCAGCTGCTCTGCACCTTCTGCAAGATGGCTTTCCACAGCAGCCACGACACCGTCAGCCTCATCGACGCCTGCTCCGAGAGGTCTGCCGCACTCTTCAGCGCCATCGCCAAGTTCAAAGCAGTCCGATATGAAATTGATAATGACCTAATGGAATTCAACATTTTAAAAAACAACTTTAAAGCTGCCAAGGAGACAAAGCGAAAAGAGATCAGAAATGGATTTCTCAAGCTGCGCAGCATCCTTCATGAGAAAGAGAAGAACATCATGGAACAGATAGAGAATCTGGAAGTGTCCAGGCAGAAGGAGATAGAAAAATATGTGTACATCACAAACCTGAAAGTGAATGAAATGGATGGCCTAATCGCCTATTCGAAGGAAGCACTGAAGGAGACAGGCCAAGTGGCATTCCTGCAGTCAGCCAAGATTCTTGTAGACAGGATTGAGGACGGCATCCAGAGCACCTACAGGCCCGACCCCCACCTACGGCTCCACTCCTCGCACTGCATGCCCTTGGATTTTGCTGAGCTCTCCAGTGCCATCCATAAGCTCTTCTCCACAGAACCCAAGAAGATGCGCTCCTCAGGGGACTTGCTGCCCTCTCCCTATCCCAGCCACTCAGAAATGATGATTGCCAAGAAGGTCACATTCAGCCCCCACAGCTTTGGCAACCAGCAGATATGCCAACGAAGCTCCTCCTTGTTGTCTTTCAACACTGCCAGTGAGAAGGCCAAGATGGGCCTGAAGGCATATGGAAGACCCCAGTCAGCTGCACCTGCCAAACCCACAGATGGCTTCTACACCTACCGGACCACTGAGGCAGAAAACCAGCTTGTTCAGGACAGCAACAGCTTCCACAACTGGTACTCATTCAATGAAGCCTCTGTGAGCACCCCAGGGCCAGTTGTAATCTACCAGACTTTGGTATATCCAACAGCCGTCAAGGTCTACTGGACATGCCCAGCAGAAGACGTGGACTCTTTTGAGATGGAATTCTATGAACTTGTTACTACTCCTCCTAACAATGTGCAGAGAGAGCTCTGTGGACAAATTCAGGACATAATGCAGCAGAGTCTGGAGCTACACAACCTCACCCCCAATACTGAGTATATGTTTAAAGTGAGAGCTATCAATGACAACGGTCCTGGCCAATGGAGTGACGTTTGCAAGGTGGTGACACCAGATGGGCATGGGAAGAACCGAGCTAAGTGGGGCCTCCTGAAAAATATTCAGTCTGCCCTCCAGAATCGCTTCTGA

Related Sequences

XP_004834403.1 Protein

Trim42 PREDICTED: tripartite motif-containing protein 42-like [Heterocephalus glaber]

Length: 723 aa      View alignments
>XP_004834403.1
METAMCVCSPCCTWQRCCPHLCSCLCCKFIFTSERNCTCFPCPYKDERNCQFCHCTCAENPNCHWCCCSWANDPNCKCCCTASSNITCYYYESRCCRNATIIFHKGCLKSIRTSSKTTLHVGSSDTQVDNLKSIPANSHLVDHLSCPMCNRLRLHSFMLPCNHSLCEKCLRRLQKQAEVTENFFILICPVCNRSHCMPYTHKMRLPENYLRGRLTKRYMQEHGFLKWRFDRSSGPILCQVCRNQRIAYKRCITCRLNLCNECLKAFHSDIAMQDHVFVDTSAEDQDEKMCIHHPSSRISEYCRSDNQLLCTFCKMAFHSSHDTVSLIDACSERSAALFSAIAKFKAVRYEIDNDLMEFNILKNNFKAAKETKRKEIRNGFLKLRSILHEKEKNIMEQIENLEVSRQKEIEKYVYITNLKVNEMDGLIAYSKEALKETGQVAFLQSAKILVDRIEDGIQSTYRPDPHLRLHSSHCMPLDFAELSSAIHKLFSTEPKKMRSSGDLLPSPYPSHSEMMIAKKVTFSPHSFGNQQICQRSSSLLSFNTASEKAKMGLKAYGRPQSAAPAKPTDGFYTYRTTEAENQLVQDSNSFHNWYSFNEASVSTPGPVVIYQTLVYPTAVKVYWTCPAEDVDSFEMEFYELVTTPPNNVQRELCGQIQDIMQQSLELHNLTPNTEYMFKVRAINDNGPGQWSDVCKVVTPDGHGKNRAKWGLLKNIQSALQNRF