Sequence details NCBI ID: XM_004834337.1 (Coding sequence)   Best Hit

Details from NCBI annotation

Gene Symbol Copb2
Gene Name coatomer protein complex, subunit beta 2 (beta prime), transcript variant X4
Entrez Gene ID 101717102

Database interlinks

Part of NW_004624730.1 (Scaffold)

For more information consult the page for NW_004624730.1 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible homologs of the naked mole-rat gene and compared to it.

COPB2 ENSCPOG00000014668 (Guinea pig)

Gene Details

coatomer protein complex, subunit beta 2 (beta prime)

External Links

Gene Match (Ensembl Protein ID: ENSCPOP00000013217, Guinea pig)

Protein Percentage 99.34%
CDS Percentage 95.8%
Ka/Ks Ratio 0.01893 (Ka = 0.0031, Ks = 0.1647)

COPB2 ENSG00000184432 (Human)

Gene Details

coatomer protein complex, subunit beta 2 (beta prime)

External Links

Gene Match (Ensembl Protein ID: ENSP00000329419, Human)

Protein Percentage 98.79%
CDS Percentage 94.55%
Ka/Ks Ratio 0.02763 (Ka = 0.0062, Ks = 0.2229)

Copb2 ENSMUSG00000032458 (Mouse)

Gene Details

coatomer protein complex, subunit beta 2 (beta prime)

External Links

Gene Match (Ensembl Protein ID: ENSMUSP00000035033, Mouse)

Protein Percentage 98.34%
CDS Percentage 91.42%
Ka/Ks Ratio 0.02073 (Ka = 0.0082, Ks = 0.3975)

Copb2 ENSRNOG00000045871 (Rat)

Gene Details

coatomer protein complex, subunit beta 2 (beta prime) (Copb2), mRNA

External Links

Gene Match (Ensembl Protein ID: ENSRNOP00000066994, Rat)

Protein Percentage 97.82%
CDS Percentage 90.15%
Ka/Ks Ratio 0.02101 (Ka = 0.0108, Ks = 0.5119)

Genome Location

Sequence Coding sequence

Length: 2721 bp    Location: 15936855..15908551   Strand: -
Raw sequence   
>XM_004834337.1
ATGCCTCTTCGACTTGATATCAAGAGAAAGCTAACTGCTAGATCTGATCGGGTTAAGAGTGTGGATTTGCATCCTACAGAGCCATGGATGTTGGCAAGTCTTTACAATGGCAGTGTATGTGTTTGGAATCATGAAACACAGACACTGGTGAAGACATTTGAAGTATGTGATCTTCCTGTTCGAGCTGCAAAGTTTGTTGCAAGGAAGAACTGGGTTGTGACAGGAGCGGATGACATGCAGATCAGAGTGTTCAATTACAATACCCTGGAAAGAGTTCATATGTTTGAAGCACACTCTGACTACATTCGCTGTATAGCTGTTCATCCAACCCAGCCTTTCATTCTGACTAGCAGTGATGACATGCTTATTAAGCTCTGGGACTGGGATAAAAAATGGTCCTGTTCACAAGTGTTTGAAGGACATACCCATTATGTTATGCAGATTGTGATCAACCCCAAAGATAATAATCAGTTTGCCAGTGCATCTTTGGACAGGACCATCAAGGTGTGGCAGCTGGGCTCTTCATCACCAAACTTCACTCTGGAGGGACACGAAAAAGGTGTGAATTGCATTGATTACTACAGTGGTGGTGACAAACCATACCTCATTTCAGGTGCAGATGACCGTCTTGTTAAAATATGGGATTATCAGAATAAAACATGTGTGCAGACACTGGAGGGACATGCCCAGAATGTGTCTTGTGCCAGTTTTCATCCTGAGTTGCCAATCATCATCACAGGTTCAGAAGATGGAACAGTGCGTATCTGGCATTCAAGCACCTACCGGCTTGAAAGCACATTGAATTACGGAATGGAGAGGGTGTGGTGTGTGGCCAGTCTGAGAGGGTCTAACAATGTCGCTCTGGGCTATGATGAAGGGAGCATCATTGTTAAGCTTGGGCGGGAGGAACCTGCCATGTCCATGGATGCCAATGGAAAGATAATTTGGGCCAAGCACTCAGAAGTCCAGCAGGCCAACCTAAAAGCAATGGGAGATGCTGAAATTAAAGATGGAGAAAGATTGCCACTGGCAGTAAAGGATATGGGCAGTTGTGAAATATACCCTCAGACAATTCAGCACAACCCTAATGGGCGGTTTGTTGTGGTATGTGGTGATGGGGAGTATATCATCTACACTGCAATGGCCTTGAGAAACAAGAGCTTTGGGTCTGCCCAGGAATTTGCATGGGCCCATGATTCTTCAGAATATGCCATAAGAGAGAGCAACAGTGTTGTAAAGATATTTAAGAACTTTAAGGAAAAAAAATCATTTAAACCAGACTTTGGAGCAGAAAGTATCTATGGAGGCTTCTTGTTGGGTGTCAGATCTGTAAATGGCTTAGCCTTCTATGACTGGGACAACACAGAACTCATACGCAGAATTGAAATTCAGCCCAAACATATTTTCTGGTCTGATTCTGGAGAACTAGTCTGTATTGCCACTGAGGAATCATTTTTTATCCTTAAGTATCTGTCAGAAAAAGTTTTGGCTGCACAGGAAACACATGAAGGAGTTACTGAAGATGGCATTGAAGATGCCTTTGAGGTTCTTGGTGAAATTCAGGAAATTGTAAAAACAGGGCTATGGGTGGGCGACTGTTTCATTTACACAAGTTCTGTGAACAGATTAAATTACTATGTTGGAGGAGAAATAGTCACCATTGCTCACTTGGACAGGACAATGTATCTCCTGGGCTATATTCCTAAAGATAATAGGCTTTATCTGGGTGATAAAGAATTAAACATCGTAAGTTACTCCCTGCTGGTTTCAGTTCTGGAATACCAGACAGCTGTCATGCGGAGGGATTTTAGCATGGCTGACAAGGTCCTTCCTACCATTCCAAAAGAACAAAGGACGAGAGTTGCACACTTTTTGGAAAAGCAGGGCTTCAAGCAGCAGGCTCTCACAGTATCCACAGATCCTGAGCATCGTTTTGAGCTGGCTCTTCAGCTTGGAGAGTTAAAAATTGCATACCAGTTAGCAGTGGAGGCAGAGTCAGAACAGAAGTGGAAACAACTTGCTGAGCTTGCCATCAGTAAATGTCAGTTTGGCCTAGCCCAAGAGTGCCTGCACCATGCCCAAGATTATGGGGGTCTGCTGCTTTTGGCTACAGCCTCTGGAAATGCTACTATGGTGAACAAGCTAGCAGAGGGTGCAGAGAAAGATGGCAAAAATAATGTAGCCTTCATGAGCTACTTTTTACAGGGCAAGCTTGATGCTTGCTTAGAGCTCTTGATTAGAACAGGACGACTGCCAGAAGCAGCCTTCCTAGCCCGAACTTACTTACCCAGTCAAGTTTCAAGGGTAGTCAAACTGTGGAGAGAGAATCTCTCAAAAGTCAATCAGAAAGCAGCGGAATCCCTTGCTGACCCTACAGAGTATGAAAACCTTTTCCCTGGATTAAAAGAAGCCTTTGTTGTTGAAGAATGGGTGAAGAAAACACATGCTGATCTGTGGCCAGCCAAGCAATACCCACTTGTCACGCCAAATGAAGAGAGAAATGTTATGGAGGAGGCAAAAGGCTTCCAACCCTCAAGATCTGTAGCTCAGCAGGAACTTGATGGGAAACCTGCTTCCCCTACTCCAGTTATTGTGGCTTCCCAAACAGCCAACAAAGAAGAAAAGAGCTTACTGGAGCTAGAAGTAGATTTGGATAATTTGGAATTAGAAGATATTGACACAACAGATATCAATCTGGATGAAGATATGCTGGATGACTGA

Related Sequences

XP_004834394.1 Protein

Copb2 PREDICTED: coatomer subunit beta' isoform X4 [Heterocephalus glaber]

Length: 906 aa      View alignments
>XP_004834394.1
MPLRLDIKRKLTARSDRVKSVDLHPTEPWMLASLYNGSVCVWNHETQTLVKTFEVCDLPVRAAKFVARKNWVVTGADDMQIRVFNYNTLERVHMFEAHSDYIRCIAVHPTQPFILTSSDDMLIKLWDWDKKWSCSQVFEGHTHYVMQIVINPKDNNQFASASLDRTIKVWQLGSSSPNFTLEGHEKGVNCIDYYSGGDKPYLISGADDRLVKIWDYQNKTCVQTLEGHAQNVSCASFHPELPIIITGSEDGTVRIWHSSTYRLESTLNYGMERVWCVASLRGSNNVALGYDEGSIIVKLGREEPAMSMDANGKIIWAKHSEVQQANLKAMGDAEIKDGERLPLAVKDMGSCEIYPQTIQHNPNGRFVVVCGDGEYIIYTAMALRNKSFGSAQEFAWAHDSSEYAIRESNSVVKIFKNFKEKKSFKPDFGAESIYGGFLLGVRSVNGLAFYDWDNTELIRRIEIQPKHIFWSDSGELVCIATEESFFILKYLSEKVLAAQETHEGVTEDGIEDAFEVLGEIQEIVKTGLWVGDCFIYTSSVNRLNYYVGGEIVTIAHLDRTMYLLGYIPKDNRLYLGDKELNIVSYSLLVSVLEYQTAVMRRDFSMADKVLPTIPKEQRTRVAHFLEKQGFKQQALTVSTDPEHRFELALQLGELKIAYQLAVEAESEQKWKQLAELAISKCQFGLAQECLHHAQDYGGLLLLATASGNATMVNKLAEGAEKDGKNNVAFMSYFLQGKLDACLELLIRTGRLPEAAFLARTYLPSQVSRVVKLWRENLSKVNQKAAESLADPTEYENLFPGLKEAFVVEEWVKKTHADLWPAKQYPLVTPNEERNVMEEAKGFQPSRSVAQQELDGKPASPTPVIVASQTANKEEKSLLELEVDLDNLELEDIDTTDINLDEDMLDD