Sequence details NCBI ID: XM_004834081.1 (Coding sequence)   Best Hit

Details from NCBI annotation

Gene Symbol Sema3f
Gene Name sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3F, transcript variant X4
Entrez Gene ID 101725304

Database interlinks

Part of NW_004624730.1 (Scaffold)

For more information consult the page for NW_004624730.1 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible homologs of the naked mole-rat gene and compared to it.

SEMA3F ENSCPOG00000008163 (Guinea pig)

Gene Details

sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3F

External Links

Gene Match (Ensembl Protein ID: ENSCPOP00000007340, Guinea pig)

Protein Percentage 97.58%
CDS Percentage 94.65%
Ka/Ks Ratio 0.05705 (Ka = 0.0118, Ks = 0.2067)

SEMA3F ENSG00000001617 (Human)

Gene Details

sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3F

External Links

Gene Match (Ensembl Protein ID: ENSP00000002829, Human)

Protein Percentage 96.05%
CDS Percentage 90.7%
Ka/Ks Ratio 0.04262 (Ka = 0.0197, Ks = 0.4621)

Sema3f ENSMUSG00000034684 (Mouse)

Gene Details

sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3F

External Links

Gene Match (Ensembl Protein ID: ENSMUSP00000079400, Mouse)

Protein Percentage 96.55%
CDS Percentage 89.04%
Ka/Ks Ratio 0.02763 (Ka = 0.0163, Ks = 0.5903)

Sema3f ENSRNOG00000017704 (Rat)

Gene Details

sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3 F (Sema3f), mRNA

External Links

Gene Match (Ensembl Protein ID: ENSRNOP00000024193, Rat)

Protein Percentage 95.92%
CDS Percentage 89.04%
Ka/Ks Ratio 0.03796 (Ka = 0.0212, Ks = 0.5574)

Genome Location

Sequence Coding sequence

Length: 2358 bp    Location: 4039095..4063940   Strand: +
Raw sequence   
>XM_004834081.1
ATGCTTGTTACTGGTTTCCTCCTCTGGGCTTCCCTACTGACTGGGGCCTGGCCAGCCACCATTACCCAAGACCATCTCCCAGCCACACCCCGGGTCCGGCTCTCCTTCAAAGAGCTTAAGGCCACAGGCACTGCCCACTTCTTCAACTTTCTTCTCAACACCACCGATTACCGTATCTTGCTCAAGGACGAGGACCACGACCGCATGTATGTGGGCAGCAAGGACTACGTGCTGTCCCTGGACCTGCACGACATCAACCGTGAGCCCCTCATTATCCACTGGGCGGCCTCCCCACAGCGCATTGAAGAATGTGTGCTCTCAGGCAAGGATGGCAATGGTGAGTGTGGGAACTTCATCAGGCTCATCCAGCCCTGGAACAGAACCCACCTGTATGTGTGTGGCACAGGCGCCTACAACCCCATGTGCACCTATGTGAACCGCGGCCGCCGGGCGCAGGCCATGCCATGGACCCAGGCGCAGGTGGTCAGAGGCCGCGGCAGCAGAGCCACAGATGGTACCGTCTACCCGATGCCCACAGCCCCACGCCAGGATTACATCTTCTACCTGGAGCCTGAGAGACTCGAGTCAGGGAAGGGCAAGTGTCCGTATGACCCCAAGCTGGACACAGCCTCAGCCCTCATCAACGAAGAGCTCTATGCTGGCGTGTACATTGATTTTATGGGCACAGACGCAGCCATCTTCCGCACACTTGGAAAGCAGACAGCCATGCGCACAGATCAGTACAACTCCCGGTGGCTCAATGACCCTTCATTCATCCATGCGGAGCTCATCCCTGACAGTGCAGAGCGCAACGATGACAAGCTCTACTTCTTTTTCCGTGAGCGGTCAGCAGAGACAGCCCAGAGCCCTGCTGTGTACGCCCGCATTGGGCGCATCTGCCTGAACGACGACGGTGGTCACTGCTGCCTGGTCAACAAATGGAGCACATTCCTGAAGGCACGGCTTGTCTGTTCCGTTCCAGGAGAGGATGGCATTGAGACCCACTTCGATGAGCTCCAGGATGTGTTTGTCCAGCAGACCCAGGATGTGAGGAACCCAGTCATTTATGCTGTCTTTACCTCCTCGGGCTCTGTGTTCCGAGGCTCTGCCGTATGTGTCTACTCGATGGCTGACATTCGAATGGTCTTCAATGGACCCTTTGCCCACAAGGAGGGCCCTAACTACCAGTGGATGCCCTTCTCAGGGAAGATGCCCTACCCCCGGCCTGGCACATGCCCTGGGGGAACCTTCACGCCCTCCATGAAATCTACCAAGGACTATCCTGACGAAGTGATCAACTTCATGCGCAGCCACCCACTCATGTACCAGGCTGTGTACCCACTGCAGCGGCGGCCCCTGGTGGTCCGCACAGGTGCCCCCTACCGTCTCACCACTGTTGCTGTAGACCAGGTGGATGCAGCCGATGGGCGCTATGAGGTGCTTTTCCTGGGCACAGACCGCGGGACAGTGCAGAAGGTCATTGTGTTGCCCAAGGATGACCAGGAGGTAGAGGAGCTCATGCTGGAGGAGGTAGCAGTCTTCAAGGATCCAGCACCTGTGAAAACCATGAGCATCTCTTCCAAGAGGCAACAACTGTATGTGGCCTCAGCCGTGGGTGTCACACACCTGAGCCTGCACCGCTGCCATGCATATGGTGCTGCCTGTGCCGACTGCTGCCTTGCCAGGGACCCCTACTGTGCCTGGGATGGCCAGGCCTGCTCCCGGTACACAGCATCTTCCAAAAGGCGGAGCCGTCGACAGGACGTCCGGCATGGGAACCCCATTAGGCAGTGCCGTGGGTTCAACTCTAATGCCAACAAGAATGCCATAGAGTCTGTGCAGTATGGTGTGGCAGGCAGCACGGCCTTCCTTGAGTGCCAGCCCCGCTCACCACAAGCCACTGTTAAGTGGCTCTTCCAGCGAGACCCTGGTGACCGGCGCCGAGAGATCCGCGCAGAGGAGCGCTTCCTGCGCACAGAGCAGGGCTTGTTGCTTCGCGCCCTGCAGCTTAGTGATCGAGGCCTCTACTCCTGCACGGCCACTGAGAACAACTTCAAGCACGTCGTCACGAGAGTGCAGCTGCACATACTGGGCCAGGATGCTGTCCATGCTGCCCTCTTCCCCCCGCTGGCTGTGAGCGTCCCACCACCTCCTGGCACAGGTCCCCCCACACCTCCTTACCAGGAGCTGGCCCAGCTGCTGGCCCAGCCCGAAGTGGGCCTCATCCACCAGTACTGTCAGGGTTACTGGCGTCATGTGCCCCCAAGTCCCAGAGAGGCCCCAGGGGCCCTCAGGCCTCCTGAACCCCAGGACCAGAAAAAGCCCCGGAACCGCCGGCACCACCCTCCGGACACATGA

Related Sequences

XP_004834138.1 Protein

Sema3f PREDICTED: semaphorin-3F isoform X4 [Heterocephalus glaber]

Length: 785 aa      View alignments
>XP_004834138.1
MLVTGFLLWASLLTGAWPATITQDHLPATPRVRLSFKELKATGTAHFFNFLLNTTDYRILLKDEDHDRMYVGSKDYVLSLDLHDINREPLIIHWAASPQRIEECVLSGKDGNGECGNFIRLIQPWNRTHLYVCGTGAYNPMCTYVNRGRRAQAMPWTQAQVVRGRGSRATDGTVYPMPTAPRQDYIFYLEPERLESGKGKCPYDPKLDTASALINEELYAGVYIDFMGTDAAIFRTLGKQTAMRTDQYNSRWLNDPSFIHAELIPDSAERNDDKLYFFFRERSAETAQSPAVYARIGRICLNDDGGHCCLVNKWSTFLKARLVCSVPGEDGIETHFDELQDVFVQQTQDVRNPVIYAVFTSSGSVFRGSAVCVYSMADIRMVFNGPFAHKEGPNYQWMPFSGKMPYPRPGTCPGGTFTPSMKSTKDYPDEVINFMRSHPLMYQAVYPLQRRPLVVRTGAPYRLTTVAVDQVDAADGRYEVLFLGTDRGTVQKVIVLPKDDQEVEELMLEEVAVFKDPAPVKTMSISSKRQQLYVASAVGVTHLSLHRCHAYGAACADCCLARDPYCAWDGQACSRYTASSKRRSRRQDVRHGNPIRQCRGFNSNANKNAIESVQYGVAGSTAFLECQPRSPQATVKWLFQRDPGDRRREIRAEERFLRTEQGLLLRALQLSDRGLYSCTATENNFKHVVTRVQLHILGQDAVHAALFPPLAVSVPPPPGTGPPTPPYQELAQLLAQPEVGLIHQYCQGYWRHVPPSPREAPGALRPPEPQDQKKPRNRRHHPPDT