Sequence details NCBI ID: XM_004833935.1 (Coding sequence)   Best Hit

Details from NCBI annotation

Gene Symbol Shisa5
Gene Name shisa homolog 5 (Xenopus laevis), transcript variant X2
Entrez Gene ID 101713609

Database interlinks

Part of NW_004624730.1 (Scaffold)

For more information consult the page for NW_004624730.1 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible homologs of the naked mole-rat gene and compared to it.

SHISA5 ENSCPOG00000020498 (Guinea pig)

Gene Details

shisa family member 5

External Links

Gene Match (Ensembl Protein ID: ENSCPOP00000016770, Guinea pig)

Protein Percentage 80.83%
CDS Percentage 82.22%
Ka/Ks Ratio 0.27232 (Ka = 0.134, Ks = 0.492)

SHISA5 ENSG00000164054 (Human)

Gene Details

shisa family member 5

External Links

Gene Match (Ensembl Protein ID: ENSP00000296444, Human)

Protein Percentage 72.8%
CDS Percentage 77.41%
Ka/Ks Ratio 0.30067 (Ka = 0.1894, Ks = 0.6298)

Shisa5 ENSMUSG00000025647 (Mouse)

Gene Details

shisa homolog 5 (Xenopus laevis)

External Links

Gene Match (Ensembl Protein ID: ENSMUSP00000026737, Mouse)

Protein Percentage 70.69%
CDS Percentage 76.15%
Ka/Ks Ratio 0.37319 (Ka = 0.2185, Ks = 0.5854)

Genome Location

Sequence Coding sequence

Length: 900 bp    Location: 2449107..2416727   Strand: -
Raw sequence   
>XM_004833935.1
ATGGCCGCGCTGGCCCTTGCGCCCCGGACTTTCTGGCTGCTGCTGCTGCTGCTCCTGCCTCCGCCTCCGGGGGCCCGTGGTGAGGAGTGCACAACTGCCCTTGGAGGCAACTCGTTCCCCAAGCTCTGTCCTGATTTCTGCTGTGGCTCCTGTTCCAACCAATACTGCTGCTCTGATGTGCTGAAGAGACTTGTGTGGACCGAGGATGAGTGTGCTGTGCCCGAGGCCAGTTTCCCCACCCCCACAGAGCCTTGGGAGCAGCTTGGCTCGGCGCTGAGGTTTCGGTCCAGCTTTGACAGCGACCCCATGTCAGGGTTTGGAGCAACTGTAGCCATCGGCCTGACCATCTTTGTGCTGTCTGTCGTCACCATCATCATCTGCTTCACCTGCTCCTGCTGCTGTTTGTACAAGATGTGCCGCCGGCCGCGTCCCATCGTGACCACCACCACGGCCACCACTGTGGTGCACGCCCCTTACCCTCAGCCTCCAAGTGCACCCCCTAGCTACCCTGGACCGACGTACCAAGGCTACCACCCCATGCCTCCCCAGCCGGGAATGCCAGCAGCACCCTACCTGACGCAGTACCCACCACCCTACCCGGCCCAGCCCATGGGGCCTCCAGCCTACCATGAGACCTTGACTGGTGAGTACCAGGTGCACTCTGTGACCCTTCCTGGCCCCGACTCCCTCCTCTGCCCCACAGGTATCTATGCCAGGTACATCTGTATTGGAGCCCCCCATGCCCACAGACAACCGATGTTCTCTCCTTTCAGGAGGTGCAGCTGCCAGTCAGCCTCCGTACAACCCGGCCTACATGGACCCCCCGAAAGCAGCCCCCTGAGTGTACCCCACCTCTGTGGGTGCCACTTGATTGTGTGTGTGTGTGTTAGGACTTTTTGA

Related Sequences

XP_004833992.1 Protein

Shisa5 PREDICTED: protein shisa-5 isoform X2 [Heterocephalus glaber]

Length: 299 aa      View alignments
>XP_004833992.1
MAALALAPRTFWLLLLLLLPPPPGARGEECTTALGGNSFPKLCPDFCCGSCSNQYCCSDVLKRLVWTEDECAVPEASFPTPTEPWEQLGSALRFRSSFDSDPMSGFGATVAIGLTIFVLSVVTIIICFTCSCCCLYKMCRRPRPIVTTTTATTVVHAPYPQPPSAPPSYPGPTYQGYHPMPPQPGMPAAPYLTQYPPPYPAQPMGPPAYHETLTGEYQVHSVTLPGPDSLLCPTGIYARYICIGAPHAHRQPMFSPFRRCSCQSASVQPGLHGPPESSPLSVPHLCGCHLIVCVCVRTF