Sequence details NCBI ID: XM_004833930.1 (Coding sequence)   Best Hit

Details from NCBI annotation

Gene Symbol Plxnb1
Gene Name plexin B1, transcript variant X1
Entrez Gene ID 101712174

Database interlinks

Part of NW_004624730.1 (Scaffold)

For more information consult the page for NW_004624730.1 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible homologs of the naked mole-rat gene and compared to it.

PLXNB1 ENSCPOG00000011366 (Guinea pig)

Gene Details

plexin B1

External Links

Gene Match (Ensembl Protein ID: ENSCPOP00000010216, Guinea pig)

Protein Percentage 90.94%
CDS Percentage 90.36%
Ka/Ks Ratio 0.19173 (Ka = 0.0516, Ks = 0.2692)

PLXNB1 ENSG00000164050 (Human)

Gene Details

plexin B1

External Links

Gene Match (Ensembl Protein ID: ENSP00000351338, Human)

Protein Percentage 87.78%
CDS Percentage 87.42%
Ka/Ks Ratio 0.17959 (Ka = 0.0701, Ks = 0.3905)

Plxnb1 ENSMUSG00000053646 (Mouse)

Gene Details

plexin B1

External Links

Gene Match (Ensembl Protein ID: ENSMUSP00000071966, Mouse)

Protein Percentage 84.99%
CDS Percentage 83.89%
Ka/Ks Ratio 0.16678 (Ka = 0.0907, Ks = 0.5438)

Plxnb1 ENSRNOG00000029510 (Rat)

Gene Details

Protein Plxnb1

External Links

Gene Match (Ensembl Protein ID: ENSRNOP00000048230, Rat)

Protein Percentage 84.77%
CDS Percentage 83.42%
Ka/Ks Ratio 0.16204 (Ka = 0.0935, Ks = 0.5768)

Genome Location

Sequence Coding sequence

Length: 6426 bp    Location: 2392830..2372338   Strand: -
Raw sequence   
>XM_004833930.1
ATGCCTGCCCTTGGCTCAGCTCTTCTCCAGGCGCTCTGGGCTGGGTTGGTCCTTGCCCTCCAGCCCCCTCCACCAGCTGCTTTCACTCCCAATGGCACACATCTACAGCACCTGGCAAGGGACCCCACCTCAGGCACCCTCTATCTGGGGGCCACCAACTTCCTGTTCCAGCTGAGCCCTGAACTGCATCTGGAAGCCATGGTGTCCACAGGCCCTGTGCTAGACAGCAGAGATTGCTTACCACCCGTGATGCCTGATGAGTGCCCCCAGGCCCAGCTTACCAACAATCCCAACCAGCTGCTCCTTGTGAGCCCAGGGGCCTTGGTGGTGTGCGGGAGTGTGCACCAGGGTGTCTGTGAACAGCGGCGCCTGGGACAGCTTGGGCAACTGCTGCTGCAGCCAGAGCGGCCTGGGGATACTCAGTATGTGGCTGCCAATGACCCTGCAGTCAGTACCGTGGGGCTGGTGGCCCAGGGCTTGGCAGGGGAGCCCCTCCTGTTTGTAGGGCGGGGATACACCAGCAGGGGTGTGGGGGGTGGCATTCCGCCCATCACAACCCGGGCCCTGAGGCCGCCAGACCCCCAAGCTGCCTTCTCCTATGAGGAGACTGCTAAGCTGGCAGTGGGCCACCTCTCCGAGTACAGTCACCACTTCGTGAGTGCCTTTGTGCGTGGGGCTAGTGCCTACTTCCTGTTCCTGCGGCGGGACCTGAAGGCTCCATCTAGAGCCTTCCGGGCCTATGTGTCTCGTGTGTGCCTTTGGGATCAACACTACTACTCCTATGTGGAATTGCCTCTGGCCTGCCAGGGGGGCCGCTACGGACTGATCCAGGCTGCAGCTGTGGCCACATCTGGGGAGGTGGCTGGTGGGGAGGTGCTCTTTGCAGCCTTCTCTTCAGCAGCACCTCCTACTGTGGGCCAGCCACCTTCTGCGGCTACTGGGGCATCGAGAGCCTCTGCACTCTGTGCCTTCCCCCTGGACGAGGTGGACCGGCTTGCTAATCACACACGAGATGCCTGTTACACCCGGAAGGGCCTCGCTGAGGACAAGACTGAGGTGGCCTACATTGCATATCATGTTAGTTCGTCCTGTGACCAGCTGCCAATGGATACCCCGGATGCTTTTCCCTGTGGCTCGGACCACACGCCCAGCCCCATGGCCAGCCGTGTCCCGTTGGAAGCCACACCAGTTTTGGAGTGGCCAGGGGTTCAACTAACAGCTGTAGCAGTCACCATGGAGGATGGGCACACCATTGCTTTCCTGGGAGATAGTCAAGGACAGCTGCACAGGGTGTACCTGGGCTCGGGGAGCGATGGCCGCTCATATTCCACACAGAGCATCCAGTGGGGGTCTGCAGTGAGCAGAGACCTCACTTTTGATGGGACCTTCGAGCACCTGTATGTCATGACTCAGACCACACTTGTGAAGGTTCCTGTGGCCTCCTGTGCCCAGCACCTGGACTGTGCATCTTGCCTTGCCCACCGGGACCCGTACTGTGGGTGGTGTGTTCTCCTTGGCAGATGCAGTCGCCGTTCTGAGTGTTCCAGGGGCCAGCACCCAGAGAAGTGGCTGTGGAGCTTCCAGCCTGAGCCAGGCTGTCTGCAGGTGGCAGCCATGAGCCCTGCCAACATCAGCCGAGAGGAGAAGCAGGAGGTTTTCCTGTTGGTGCCAGACCTGCCACCCCTGTGGCCAGGGGAGTCATATTCTTGCCACTTTGGAGAACATCAGAGTCCTGCCTTGCTGACCAGTTCTGGTGTGATGTGCCCTTCTCCAGACCCTAGTGAGGTCCCAGTGCTGCAGAGAGGAGCCGACCATATGTCTGTGAGTGTGGAGCTCAGGTTTGGCACCGTGGTGATCGTCAGAGCTTCCCTCTCCATCTATGACTGTGTGGCAGTCACTGAGCTCCACCCATCTGCACCGTGCCAGGCCTGCGTGAGCAGCCGCTGGGGCTGTAACTGGTGTGTCTGGCAACACCTGTGCACGCACAAGGCTGCGTGCGATGCTGGGCCAATGGTGGTGAGCCAGCAGAGCCCGCTTTTCTCCCTAGCCCCTCCTGCAAGAGACATGCCTAGTCCCCTCCCACCCACAACCCCCCAAACCATGGTCACCCCTACTTCTTACACTGTTCCTTTGGAGCCTGGGGCTCCCTCTATAACCCCAGCCTCAGATGTGTCACCTGGGGTCAGGCCTTCCCTGCTCAGTCCCTGGAGGCCATGGGCAGGACCCGGCCCCATACCTTCCCCCACCTCCACAGAGTCACCTCTCCACGAGAAGCCCCTCCTGCCCAGCTTCCCCACCAGACCTGGAAACTCTGTCCCTGCCCCCACTGACTTGGGACCTTCAGCCGTACCTGAGGACCTCTCGACCTCCCACCTGGCACCCTCAGAAGCAGCAGCAATGCCCCCTGCAGAGCCTGACCCTGAAGCCCTTTCCTCTACGGTGGCCCTGGACCAGCCCCCTGGCACTGCTCCTGCCACCACTTTCCCAGGGGCCGCTGGCTCCACGAAGCCCGCTCTGGACTGGCTCATGAGAGAAGGCGGCGAGCTGCCCGAGGCAGACGAGTGGACAGGGGGTGACGCGCCCGCCTTCTCCACTTCCACCCTCCTCTCAGGTGATGGAGACTCAGCAGAGCACGAGGGCCCTCTCGCCCCCCTCATCCTCCTGTCCAGCCTGGACTACCAGTACGACACCCCCGGGCTCTGGGAGCTGGGAGAGGCGAGTTGGAGGGCCGGCTCTTGTCCCTGTGTGGAGAGCGTCCAGAGCTCTACACTGATCCCTGTCTCCGTGGAACGAGAGGTCCACTTGCGTGGCCAGAATCTGCGCCTCCTGCAGGACAGCCCAGGAGACAGTGAGTGTGTGATGCAGCTGGAGGGCCATGAGGTGGTAGTGAAGGCCCAGGTTGAGTGTGAGTCGCCTCCGAATACCTGGTGCCATGTCAAGTGCCAGCAGCACCAGCTCAGCTATGAGGCCCTGCAGCCTGAGCTCCGGGTGGAGCTGTTTCTGCGTTGGGCCGGCCGCCTGCGTGTGGACAGTGCGGATGGGCTGCATGTGGTACTGTACGACTGTTCTGTGGGACACGGGGACTGCAGCCACTGCCAGACTGCCATGCCCCAGTATGGCTGTGTGTGGTGCGAGAGAGAACATCCGCGTTGTGTGGCCAAGGAGGCCTGTGGCAAGTCTGAGGCTGTAGCCACCCAGTGCCCTGCACCCCTCATCTCCTCGGTGGAACCACTGACTGGGCCTGTAGATGGAGGCACTCGCGTTACCATTAGGGGCTCCAACCTGGGCCAGCATGTTCATGATGTACTAGACATGGTCAGGGTGGCTGGAGTGCCCTGTGCTGTGGATGCCCAGGATTATGAAGTGTCCAGCAGTCTCGTGTGTATCACTGGGGCCAGTGGGGAGGAAGTGACTGGTGCTGTGGTAGTGGAAGTGCTGGGAAGAGGACGCGGCATCTCGGAGCTCAACTTTGCCTACCAGGACCCCAAGGTGCATTCCATTTTCCCAGTTCAAGGCCCCAGAGCTGGGGGTACCTGCCTTACCCTGCATGGTTCCAAGCTCCTGACGGGGCGCCTGGAGGACATTCGAGTGGTGGTGGGAGACCAGCCTTGTCGCTTGCTTCTGGAGCCACAGTTGGAGCAGCTGCGCTGTGAGACCAGCCCGTACCACATGCCTACCACCCTTCCTGTGATGGTGTGGTTTGGAGCCACTGAGCGGAGGCTTCAGCATGGCCAGTTCAAGTATACGGCAGACCCTAATGTCACCTCTGCTGGCCCCACCAAGAGCTTCCTCAGTGGAGGACGTGAGATCTGGGTCCGTGGCCAGAATCTAGATGTGGTGCAGATGCCAAGAATCCGAGTGACTGTGGCTTCAGGACCTCTGCAGCCTGGTCAAGGTCTGGGGCGGAGGCGCCGTGTGGTCCCAGAGGCAGCGTGTTCCCCTGGAGCTTCCTGTGGTGGACAGCATTTTGAGGAGCCTTGCAATGTGAACTCCTCCCAGCTCATCCTGTGTCGCACACCTGCCCTCCCTGGCCTGCCTGAGGACCTCTTGGTTCAGGTGGAATTTATCCTCGATAATTTGGTCTTTGACTTTGCAACACTGAGTCCCACTCCCTTCTCCTACGAGGCTGATCCCACCTTGAAGCCCCTCAACCCTGAGGACCCTACTGCACCATTCCGACACAAGCCCGGGAGTGTGTTCTCTGTGGAGGGAGACAATCTGGACCTTGCAATATCCAAAGAGGAGGTAGTGGCCATGATAGGAGATGGCCCCTGTGTGGTGAAGACACTGACCCGGTACCACCTGTATTGTGAGCCCCCCATGGAGCAGCCTTTGCCATGGCATCATACCCTCCGGGAGGCACCTGACACTTTGCCTGAGTTCACGGTGCAGATGGGGAACCTGCACTTCTCCCTGGGTCATGTGAAGTATGATGGCGAGAGCCCTGTGGCCTTTCCTGTGGCAGCCCAGGTGGGCTTGGGGGTGGGCACCTCTCTTCTGGCTCTGGGTGTCATCATCATTGTCCTCATGTACAGGAGGAAGAGCAAGCAGGCCCTGAGGGACTATAAGAAGGTTCAGATCCAGTTGGAGAATCTGGAGAGCAGTGTGAGGGACCGCTGCAAGAAGGAATTCACAGACCTCATGACTGAGATGACCGATCTCACCAGTGACCTTCTGGGCAGTGGCATCCCCTTCCTTGACTACAAGGTGTATGCAGAGAGGGTCTTCTTTCCCGGCCACCGGGAGTCACCCTTGCACCGGGACCTTGGTGTGCCTGAGAGCAGGCGACCCACTGTGGAGCAAGGCCTGGGACAGCTGTCCAATCTGCTCAATAGCAAGCTCTTCCTCACCAAGTTCATACACACGCTGGAGAGTCAGCGCACCTTCTCAGCTCGGGACCGTGCCTATGTGGCATCTCTGCTCACTGTCGCCCTGCATGGGAAGCTTGAGTACTTCACCGACATCCTCCGCACCCTGCTCAGTGACCTGGTAGCCCAGTATGTGGCCAAGAACCCCAAGCTGATGCTGCGCAGAACAGAGACTGTGGTAGAGAAGCTGCTCACCAACTGGATGTCCATCTGCCTCTATACCTTCCTGAGGGACTCAGTAGGGGAGCCTCTGTACATGCTCTTCCGAGGAATTAAGCATCAAGTGGACAAGGGGCCAGTAGACAGTGTGACTGGCAAAGCCAAATACACCCTCAACGATAACCGGTTGCTCAGAGAGGATGTGGAATACCGACCTCTGACCTTGAATGTGCTGTTGGCGATGGGGCCTGGGACAGGAGAGTCCCAGGGTATGCCTGTGAAGGTCCTGGACTGTGACACCATCTCCCAGGCCAAGGAGAAAATGCTGGACCAGCTTTATAAAGGAGTGCCTCTTGCCCAGCGGCCAGACCCTCACACCCTGGACGTTGAGTGGCGGTCTGGGGTGGCTGGTCACCTCATCCTCTCTGATGAGGATGTCACTTCCGAGGTCCAGGGTCTGTGGAGGCGCCTGAACACTCTGCAACATTACAAGGTCCCAGATGGAGCAACTGTGGCCCTTGTCCCCTGCCTCACCAAGCATGTTCTCAGGGAAAACCAGGATTACGTCCCTGGAGAACGGACTCCAATGCTGGAAGATGTAGATGAGGGAGGCATCCGGCCCTGGCACCTGGTGAAGCCAAGTGAGGAGCCAGAGCCACCCCGGCCTCGGAGGGGCAGCCTTCGGGGTGGGGAGCGGGAGCGAGCCAAGGCCATCCCCGAGATCTACCTGACTCGCCTGCTGTCCATGAAGGGCACCCTGCAGAAGTTTGTGGATGACCTGTTCCAAGTGATTCTCAGCACCAGCCGCCCTGTGCCTCTGGCTGTGAAGTACTTTTTTGACCTGCTGGATGAGCAGGCCCAGCAGCACGGCATCTCAGACCAAGACACCATCCACATCTGGAAGACCAACAGCCTACCTCTGAGGTTCTGGATCAATATCATAAAAAACCCGCAGTTTGTGTTCGACGTGCAGACGTCTGATAACATGGATGCGGTGCTCCTTGTCATCGCACAGACTTTCATGGATGCCTGCACCCTGGCTGATCACAAGCTGGGCCGGGACTCCCCCATCAACAAGCTTCTGTATGCTCGAGACATTCCCCATTACAAAGGGATGGTGGAAAGGTACTACGCAGACATTAGACAGACCGTTCCAGCCAGTGATCAAGAGATGAACTCTGCCCTGGCGGAGCTTTCCCGGAACTATTCTGGTGACCTTGGGGCACGAGTGGCGCTGCATGAACTCTACAAGTATATCAACAAATACTACGATCAGGTGGGCAGACCCTGGGTCCTGATTAGGAGGCTCACCTCAAGGGACCTCCTAGAAGGCTCGGGACAAATTATGAGGGGATCTGGGTTGGTAACTCAGGTTGGGGGGCCTTTGCCTCTCCCCTAG

Related Sequences

XP_004833987.1 Protein

Plxnb1 PREDICTED: plexin-B1 isoform X1 [Heterocephalus glaber]

Length: 2141 aa      View alignments
>XP_004833987.1
MPALGSALLQALWAGLVLALQPPPPAAFTPNGTHLQHLARDPTSGTLYLGATNFLFQLSPELHLEAMVSTGPVLDSRDCLPPVMPDECPQAQLTNNPNQLLLVSPGALVVCGSVHQGVCEQRRLGQLGQLLLQPERPGDTQYVAANDPAVSTVGLVAQGLAGEPLLFVGRGYTSRGVGGGIPPITTRALRPPDPQAAFSYEETAKLAVGHLSEYSHHFVSAFVRGASAYFLFLRRDLKAPSRAFRAYVSRVCLWDQHYYSYVELPLACQGGRYGLIQAAAVATSGEVAGGEVLFAAFSSAAPPTVGQPPSAATGASRASALCAFPLDEVDRLANHTRDACYTRKGLAEDKTEVAYIAYHVSSSCDQLPMDTPDAFPCGSDHTPSPMASRVPLEATPVLEWPGVQLTAVAVTMEDGHTIAFLGDSQGQLHRVYLGSGSDGRSYSTQSIQWGSAVSRDLTFDGTFEHLYVMTQTTLVKVPVASCAQHLDCASCLAHRDPYCGWCVLLGRCSRRSECSRGQHPEKWLWSFQPEPGCLQVAAMSPANISREEKQEVFLLVPDLPPLWPGESYSCHFGEHQSPALLTSSGVMCPSPDPSEVPVLQRGADHMSVSVELRFGTVVIVRASLSIYDCVAVTELHPSAPCQACVSSRWGCNWCVWQHLCTHKAACDAGPMVVSQQSPLFSLAPPARDMPSPLPPTTPQTMVTPTSYTVPLEPGAPSITPASDVSPGVRPSLLSPWRPWAGPGPIPSPTSTESPLHEKPLLPSFPTRPGNSVPAPTDLGPSAVPEDLSTSHLAPSEAAAMPPAEPDPEALSSTVALDQPPGTAPATTFPGAAGSTKPALDWLMREGGELPEADEWTGGDAPAFSTSTLLSGDGDSAEHEGPLAPLILLSSLDYQYDTPGLWELGEASWRAGSCPCVESVQSSTLIPVSVEREVHLRGQNLRLLQDSPGDSECVMQLEGHEVVVKAQVECESPPNTWCHVKCQQHQLSYEALQPELRVELFLRWAGRLRVDSADGLHVVLYDCSVGHGDCSHCQTAMPQYGCVWCEREHPRCVAKEACGKSEAVATQCPAPLISSVEPLTGPVDGGTRVTIRGSNLGQHVHDVLDMVRVAGVPCAVDAQDYEVSSSLVCITGASGEEVTGAVVVEVLGRGRGISELNFAYQDPKVHSIFPVQGPRAGGTCLTLHGSKLLTGRLEDIRVVVGDQPCRLLLEPQLEQLRCETSPYHMPTTLPVMVWFGATERRLQHGQFKYTADPNVTSAGPTKSFLSGGREIWVRGQNLDVVQMPRIRVTVASGPLQPGQGLGRRRRVVPEAACSPGASCGGQHFEEPCNVNSSQLILCRTPALPGLPEDLLVQVEFILDNLVFDFATLSPTPFSYEADPTLKPLNPEDPTAPFRHKPGSVFSVEGDNLDLAISKEEVVAMIGDGPCVVKTLTRYHLYCEPPMEQPLPWHHTLREAPDTLPEFTVQMGNLHFSLGHVKYDGESPVAFPVAAQVGLGVGTSLLALGVIIIVLMYRRKSKQALRDYKKVQIQLENLESSVRDRCKKEFTDLMTEMTDLTSDLLGSGIPFLDYKVYAERVFFPGHRESPLHRDLGVPESRRPTVEQGLGQLSNLLNSKLFLTKFIHTLESQRTFSARDRAYVASLLTVALHGKLEYFTDILRTLLSDLVAQYVAKNPKLMLRRTETVVEKLLTNWMSICLYTFLRDSVGEPLYMLFRGIKHQVDKGPVDSVTGKAKYTLNDNRLLREDVEYRPLTLNVLLAMGPGTGESQGMPVKVLDCDTISQAKEKMLDQLYKGVPLAQRPDPHTLDVEWRSGVAGHLILSDEDVTSEVQGLWRRLNTLQHYKVPDGATVALVPCLTKHVLRENQDYVPGERTPMLEDVDEGGIRPWHLVKPSEEPEPPRPRRGSLRGGERERAKAIPEIYLTRLLSMKGTLQKFVDDLFQVILSTSRPVPLAVKYFFDLLDEQAQQHGISDQDTIHIWKTNSLPLRFWINIIKNPQFVFDVQTSDNMDAVLLVIAQTFMDACTLADHKLGRDSPINKLLYARDIPHYKGMVERYYADIRQTVPASDQEMNSALAELSRNYSGDLGARVALHELYKYINKYYDQVGRPWVLIRRLTSRDLLEGSGQIMRGSGLVTQVGGPLPLP