Sequence details NCBI ID: XM_004833919.1 (Coding sequence)   Best Hit

Details from NCBI annotation

Gene Symbol Cxcl1
Gene Name chemokine (C-X-C motif) ligand 1 (melanoma growth stimulating activity, alpha), transcript variant X2
Entrez Gene ID 101705558

Database interlinks

Part of NW_004624730.1 (Scaffold)

For more information consult the page for NW_004624730.1 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible homologs of the naked mole-rat gene and compared to it.

CXCL1 ENSCPOG00000015206 (Guinea pig)

Gene Details

Cavia porcellus chemokine (C-X-C motif) ligand 1 (Cxcl1), mRNA.

External Links

Gene Match (Ensembl Protein ID: ENSCPOP00000013707, Guinea pig)

Protein Percentage 68.27%
CDS Percentage 74.68%
Ka/Ks Ratio 0.44604 (Ka = 0.2599, Ks = 0.5827)

Cxcl1 ENSMUSG00000029380 (Mouse)

Gene Details

chemokine (C-X-C motif) ligand 1

External Links

Gene Match (Ensembl Protein ID: ENSMUSP00000031327, Mouse)

Protein Percentage 56.25%
CDS Percentage 64.58%
Ka/Ks Ratio 0.18949 (Ka = 0.386, Ks = 2.0372)

Cxcl1 ENSRNOG00000002802 (Rat)

Gene Details

chemokine (C-X-C motif) ligand 1 (Cxcl1), mRNA

External Links

Gene Match (Ensembl Protein ID: ENSRNOP00000003778, Rat)

Protein Percentage 60.42%
CDS Percentage 66.32%
Ka/Ks Ratio 0.0383 (Ka = 0.3249, Ks = 8.4835)

Genome Location

Sequence Coding sequence

Length: 315 bp    Location: 1552599..1551122   Strand: -
Raw sequence   
>XM_004833919.1
ATGGCCCACACCGCCCCCAGTGCCCTGCGCCCCGTGCCACTGCTGCTGCTGCTGCTGCTGCTGGTGACGGGAGCCGCCCGGAGAGCCGCAGGAGCGCCTGTGACCACCGAGCTGCGCTGCCGCTGTCTGCAGCCTGTGCGCGGGCTGCACCCCAAGAGTATCCAGAGCGTAGCCGTGACGGCGCCGGGACCCCACTGCCACCAAACCGAAGTCGTGGCCACGCTCAAGGATGGACGTGTAGCCTGCCTAGACCCGGAGGCCCCGATGGTGCAGAGAGTCCTGCAGAGAATGCTGAGCAAAAGCAAAGCCACCTGA

Related Sequences

XP_004833976.1 Protein

Cxcl1 PREDICTED: growth-regulated alpha protein isoform X2 [Heterocephalus glaber]

Length: 104 aa      
>XP_004833976.1
MAHTAPSALRPVPLLLLLLLLVTGAARRAAGAPVTTELRCRCLQPVRGLHPKSIQSVAVTAPGPHCHQTEVVATLKDGRVACLDPEAPMVQRVLQRMLSKSKAT