Sequence details NCBI ID: XM_004921197.1 (Coding sequence)   Best Hit

Details from NCBI annotation

Gene Symbol unclassified transcription discrepancy
Gene Name mRNA
Entrez Gene ID 101709843

Database interlinks

Part of NW_004624852.1 (Scaffold)

For more information consult the page for NW_004624852.1 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible homologs of the naked mole-rat gene and compared to it.

CYLC1 ENSCPOG00000014248 (Guinea pig)

Gene Details

cylicin, basic protein of sperm head cytoskeleton 1

External Links

Gene Match (Ensembl Protein ID: ENSCPOP00000014843, Guinea pig)

Protein Percentage 61.3%
CDS Percentage 73.57%
Ka/Ks Ratio 0.52456 (Ka = 0.305, Ks = 0.5814)

CYLC1 ENSG00000183035 (Human)

Gene Details

cylicin, basic protein of sperm head cytoskeleton 1

External Links

Gene Match (Ensembl Protein ID: ENSP00000331556, Human)

Protein Percentage 56.2%
CDS Percentage 75.16%
Ka/Ks Ratio 0.75084 (Ka = 0.3175, Ks = 0.4229)

Cylc1 ENSMUSG00000073001 (Mouse)

Gene Details

cylicin, basic protein of sperm head cytoskeleton 1

External Links

Gene Match (Ensembl Protein ID: ENSMUSP00000098840, Mouse)

Protein Percentage 39.87%
CDS Percentage 60.19%
Ka/Ks Ratio 0.56811 (Ka = 0.6774, Ks = 1.1924)

Cylc1 ENSRNOG00000022818 (Rat)

Gene Details

cylicin, basic protein of sperm head cytoskeleton 1

External Links

Gene Match (Ensembl Protein ID: ENSRNOP00000032752, Rat)

Protein Percentage 46.32%
CDS Percentage 65.15%
Ka/Ks Ratio 0.62765 (Ka = 0.522, Ks = 0.8317)

Genome Location

Sequence Coding sequence

Length: 2325 bp    Location: 4640785..4561267   Strand: -
Raw sequence   
>XM_004921197.1
ATGGACCGAATTTCCATGGCAGCTCTTGTGGATGCAACTGTAGATACACCTAGTACCAGGACAACCCCTACAGCCTTGGTTGTAAGCCAACCTAATCCCTGGATATCCCACATGGATATAGATTTTAGACAAGAAGTAAACATCCCAACATATGTTAACTCCATTTCAATCAATGAAACTAGCAGAAAATCATGCAATCTAGAACACTTTGCTTTGACATTTCTTGAACAACCCATGCCAGGTAGAAAAGAGAGATCAAGACATTCAGAATTACAAATCACAGTTCCTAGGCAAGCCAATGAAAAAATAGAAGAAGGTAATAAGCCAGCTCGTATGTGGATAAGACATNTCTTTAAATTTTTTTTCAAATGGCCATCCATTTACCTAACTTTCCAAATACAGGCTCCATCTAGACATCCTTATTATTCCCAAATCCATCCTACAGAGGCAGAAACTAAGAAGTTCTCAAATGATATAAAAGCAGCTTTGAGGAAAGACTCCAAGAAAAAAACAAATCCACATATGACAAATCCAGAATCCAAAAAAATAGTAAAAGATGATAAACCTCAAAGAAGAAATAAAGGAGATAAAATTCCATCAGAATCCTTAAAGGAAAGTGAACAGATTAAGATGTCAAAGTCCAAATCAAAAACAATTCCAGTATCCAAATATTCTAAAATGGTGTCAAACACTGTTTCAAAATGTAAGACAAATTCGGAGAATTCCAAGGAGTCAAATACAGATTCCATATGTAGAAAGAGCAATATCAATAAAGATTCTAAGACCTCTAAGAAAAATTCTGATATCCAATCAGAGACTTATTCAATAAATAGTTCAAATGTCGGTTTAATAATATATTTAGAAGAGTCTGTTGCTGAATCCATGGATTTTGACATATGGTTAAAGAATTACTCACACAACAATAAGAAGACGCCTGCAAAGAAAGACACAAAGAAGAGCTCAGATGCTGAATCTGGAGACTCAAAGGATGCAAATAAAGGTGCAAAGAAGGATCAGAAACCTTCAAAGAAAGATGACAAGAAAAAAGATGCAAAAAAGGACACAGAATCTACTGATGCTGAATCTGGAGAGTCAAAGGATGCAAAGAAAGGTGCAAAGAAGGATCAGAAACCTTCAAAGAAAGATGACAAAAAGAAAGATGCAAGAAAGGAGGCAGAATCTACAGATGCTGAATCTGGAGAATCAAAGGATACAAAAAAGAATACAAAAAAAGATAAGAAATCTTCAAAGAAAGATAGCAAGAAGAAAGATGAAAAAAATGGCACTGTTCCTACTGATTCTGAATCTGAATTAGAGTCAAAGAAGGGTAAGAAAGATGACCAAAAAGAAAAGAAAGATTCTAAAAAAAAATCCATCAAGAAAGACACAGCTTCTTCTGGTCCTGAGTCTGCATCTGAAGGAGATTCAAAAAAGGGTAAGAAAGCTGATAAAAGAAAGGATGCAAAAAAAGACGCAGAGTCTACTGAAATTGAGTCTGACTTGGGGTCAAAGAAGGGTAAGAAGGAGTCAAAGAAGGAGAATAAAGGTTTAATGAAAAAGGCCAAGAAGGAACCAAAGAAGGACACAGAATCTATTGATAGATTTGATGATTCAGACGCCAGATCTACAGATTCAAAGAAGGGAGTATGTGAAATAAAGAGAGGATTTAGAATGTCATTTAAAAAGNATGAATTCAGTGAAAAAGGAAAAAGACCAAGTACAGGTAGAGTTCCTCCATCAAGAGAAAGTCCACCACTCTCTCCTTGTGAAGCTTTTCTACCGTTACCTAGGATCAAATGTCTCTGTCAGTGCAGAATGCCACCTCCACCTCCAAAACCAAGATATGCTCCTTTGTGTAACTTAGCATTTTGGACCATCTTGCCTTCTGCTTTGCACACTTTACTGAATGGCTTTGAACAAGAAGATAAATATGGGGTAAAATTTTCTCATGGAAGACTCCGCTCCCTGTGCCAACTGAAATGGCCAGCCTTTGGGGTGGGACGGCCAGCCAAAGGGACTTTTGACCCCAGTATTTGCCGGGTGGTTTGGAGCAAGGTCACCAGTCACCCTGGCCACCCAGACCAATTTCCCTACATAGACATCTGGGTTCAGGCTTTTGAGGAACCTCCGGCTTGGCTGCAGCACTGTTCCCTTCTAACAGGCACTCACATTTTAGTCGCTGCCCCAAAAAGACTCCGGGGACTTAAGACCTGGACTCCCAAGCCAGTACTCTCACAGGAACCTGACCCCTTAGACCCCTTGGGAGGGCCTCCACCCTATGTGGAATCCTCTACCTCCTCAGATGGATCCCGCTCTAAACCCTGA

Related Sequences

XP_004921254.1 Protein

unclassified transcription discrepancy PREDICTED: LOW QUALITY PROTEIN: cylicin, basic protein of sperm head cytoskeleton 1 [Heterocephalus glaber]

Length: 774 aa      View alignments
>XP_004921254.1
MDRISMAALVDATVDTPSTRTTPTALVVSQPNPWISHMDIDFRQEVNIPTYVNSISINETSRKSCNLEHFALTFLEQPMPGRKERSRHSELQITVPRQANEKIEEGNKPARMWIRHXFKFFFKWPSIYLTFQIQAPSRHPYYSQIHPTEAETKKFSNDIKAALRKDSKKKTNPHMTNPESKKIVKDDKPQRRNKGDKIPSESLKESEQIKMSKSKSKTIPVSKYSKMVSNTVSKCKTNSENSKESNTDSICRKSNINKDSKTSKKNSDIQSETYSINSSNVGLIIYLEESVAESMDFDIWLKNYSHNNKKTPAKKDTKKSSDAESGDSKDANKGAKKDQKPSKKDDKKKDAKKDTESTDAESGESKDAKKGAKKDQKPSKKDDKKKDARKEAESTDAESGESKDTKKNTKKDKKSSKKDSKKKDEKNGTVPTDSESELESKKGKKDDQKEKKDSKKKSIKKDTASSGPESASEGDSKKGKKADKRKDAKKDAESTEIESDLGSKKGKKESKKENKGLMKKAKKEPKKDTESIDRFDDSDARSTDSKKGVCEIKRGFRMSFKKXEFSEKGKRPSTGRVPPSRESPPLSPCEAFLPLPRIKCLCQCRMPPPPPKPRYAPLCNLAFWTILPSALHTLLNGFEQEDKYGVKFSHGRLRSLCQLKWPAFGVGRPAKGTFDPSICRVVWSKVTSHPGHPDQFPYIDIWVQAFEEPPAWLQHCSLLTGTHILVAAPKRLRGLKTWTPKPVLSQEPDPLDPLGGPPPYVESSTSSDGSRSKP