Sequence details NCBI ID: XM_004921166.1 (Coding sequence)   Best Hit

Details from NCBI annotation

Gene Symbol unclassified transcription discrepancy
Gene Name mRNA
Entrez Gene ID 101698938

Database interlinks

Part of NW_004624814.1 (Scaffold)

For more information consult the page for NW_004624814.1 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible homologs of the naked mole-rat gene and compared to it.

SWT1 ENSCPOG00000014251 (Guinea pig)

Gene Details

SWT1 RNA endoribonuclease homolog (S. cerevisiae)

External Links

Gene Match (Ensembl Protein ID: ENSCPOP00000012840, Guinea pig)

Protein Percentage 85.65%
CDS Percentage 90.39%
Ka/Ks Ratio 0.36724 (Ka = 0.078, Ks = 0.2125)

SWT1 ENSG00000116668 (Human)

Gene Details

SWT1 RNA endoribonuclease homolog (S. cerevisiae)

External Links

Gene Match (Ensembl Protein ID: ENSP00000356470, Human)

Protein Percentage 79.05%
CDS Percentage 86.82%
Ka/Ks Ratio 0.46938 (Ka = 0.1216, Ks = 0.2592)

Swt1 ENSMUSG00000052748 (Mouse)

Gene Details

SWT1 RNA endoribonuclease homolog (S. cerevisiae)

External Links

Gene Match (Ensembl Protein ID: ENSMUSP00000067516, Mouse)

Protein Percentage 71.65%
CDS Percentage 80.7%
Ka/Ks Ratio 0.44119 (Ka = 0.1883, Ks = 0.4268)

Swt1 ENSRNOG00000032258 (Rat)

Gene Details

Swt1 RNA endoribonuclease homolog (S. cerevisiae) (Swt1), mRNA

External Links

Gene Match (Ensembl Protein ID: ENSRNOP00000049813, Rat)

Protein Percentage 74.02%
CDS Percentage 82.21%
Ka/Ks Ratio 0.44734 (Ka = 0.1708, Ks = 0.3819)

Genome Location

Sequence Coding sequence

Length: 2559 bp    Location: 8383019..8300896   Strand: -
Raw sequence   
>XM_004921166.1
ATGGTTGTTTGGTTGGTTGGTTTCTTCTTCACAGATTTGCTTAAATCAGACCATACAGACATTCAGTACTATAATACAAAAAGAAGACAAGAACGTAAAAGATTGAATGTAGAAATTGACATATCTGGAAAGAAACCAAAAATCAGTTCTTCATCCCAAGGACCTATTAAACTACAAGAAGCATCATCTTCAAATAATAATCAATTTATTTCACAGAGTACTTCAAATGGGACTAAAAAATATAGGAAATGTAAAGAAAGTAAATTGATAAATGTTACACGTAAACTTGACCATGGAATTAAGTACCTTAACAATCCTAAAATTGCCAAAGATATGAAACCTAAAGTGGAAGGCCAGACAAGGGAAAAGAAATGGCCTCATCTGCTTGTTCAGAGAGAGACGATGAAAGAACTTAAGAGAGAAAGACACAAATTTAGAGACAGTTCTGAAAAAAGTAAATGTAAGAAAAATCAATTTTCTCAAGATTATTCCAACAAAATTATTCACGAACCTGACTCTAGAAAAAAGAAGATCAGCTTCAAAATTCCAATAAAATCCTCTAATACCCACCAGAAGCTTGTAGAAGAAAATGTCTTCAATTTAGTTTCTAATAAGGTAAAGACTAAGCAGGGAGCAAGACAATCCCCAGAAGGCTCCCAGGTTTCATTAAATTTGACCAGGCATAAAGATGAACATTTACTTTTCGATTCCACATATAAGCAGACTGTTTGTGATCATAAAAGAAAATATAATGAGCACCAAGAAAGAAATGATTCAAGTTCTAAGAAAAACCTTACTCAGAGTTTTGAAGCACCATGTTCTTCAGTGTCACCTGAAAATATTCAAGATACTGATCAAGAGATGCAGATAGTAGAAGAGCTTCATGCTGCACGTGTGGGAAAAAGTGTGGATTTAACTGTGGTTCCACCTTCTGGAGAGTTAATGAGTATGGAAATTGACTTGGTGGAAGATGATGTACATTCTTCTGCCGCAAATACTGTTTCAGACAAAAAGCTTCTTCTAATTGTTATTGACACAAATATCCTGATGAATCATCTCAAATTTGTTAGAATTTTGAAGACAACAGAAATATCAGGCTTTGACAGACTTGTGTTAATAATTCCTTGGGTTGTTGTGCAAGAGTTAGATCGAATGAAGGCAGGAAAACTACTGAAACATGCCCAGCACAAAGCTATACCTGCAGTTCATTTCATCAACAACAGTCTCAAGAGCCAAGACAGAAAGCTATGGGGTCAATCAATACAACTTGCTTCTCAAAAACTTTATGGATTGAGTGATGAGAACAATGATGATCGAGTATTAAAATGCTGTCTTCAGTACCAGGAATTATTCCCCAGTTCTCTTGTAATTCTGTGCACGGATGATAGAAATTTGAGAAGCAAAGGCCTTATAAGTGGTGTGAAGTCACTCAGTAAAGAAGAATTAAGTGCAGAGTTATTGACCTTATCTCTGAACGCAGATGTGTGTCATCAGCCTTGTATATCTAAGCAACAATTGAAAGCAGAAGCAAAACCTGTAGAAGAGACCTCTGAGAAGAAATCTGCCAATTCTGGACTGCCCATTGTACTTGAACGCCTTATATCTGATCTTGAAAGATCTCTTGGAACAGCTTTATCTTCAATATTAGAAACAGAAATGAAAATTGCTTTTGGGAACCTTTGGATGGAGATGCTGTACTTGAAACCACCATGGACTCTAATACATTTATTACAGTGCTTTAAAAAACATTGGTTGGCTGTATTTGGATTAGTTATGGAAAAGAACTTACTTTTAACTGTTGAGAGCCTATATGAAAATTTTTGTAAAGCTAATAATGCAGTGGACTTTACAACTGTGAAATTCTTGCTTCAAGATTCTAAAAGCTTGTTACACGCTTTCAGTACAAGGTCGAATTATGATGGTATTCTTCCACAGGCCTTTGCTCAAATAAGCAGACTACTACAGACATTTGCAGAGGTCAAGACAAAACTTAAGCCAAATTCTTCAGAAAACACAATGAGTAAAACGCCGGAAGACGCTCCTTTGATGAAGTCTCATAACCAAGAAATCACTGTTTTCTCGGGTTCTCATCTTCCCCAGTCCAACAGGCATCAAGAAATCTGGTCTGTCCTAGAGAATGTTTGGATTACAATATATCAGAACAGCACAGATGTGTTTCAAAAATTGAACTCAAATGCAGCTCTGACTACTTCAAAAATAGCATCATTTGAAGAAGCATTTATGTATCTTCAAAAGTTAATGGCAGCTGTGAAAGATATTCTTGAAGGAATTCAGAGGATTTTGGCCCCTAACAGTAATTATCAAGATATTGAGACCCTTTATAACTTCTTAATCAAGTATGAGGTAAATAAACATGTCACATTTACTGCCCAGGAACTCTATGATTGTGTTTCTCAGACTGAGTATCGGGAAAAGTTAACCATTGGATGCCGCCAACTAGTGGAAATGGAATGTGCCATGCAGCAGTGCAACGCATCTGTGTACATGGGAGCCAAAAACAGGGGATGGTGTGAAGACACTTTCAGCTGTAGGACCTAA

Related Sequences

XP_004921223.1 Protein

unclassified transcription discrepancy PREDICTED: LOW QUALITY PROTEIN: SWT1 RNA endoribonuclease homolog (S. cerevisiae) [Heterocephalus glaber]

Length: 852 aa      View alignments
>XP_004921223.1
MVVWLVGFFFTDLLKSDHTDIQYYNTKRRQERKRLNVEIDISGKKPKISSSSQGPIKLQEASSSNNNQFISQSTSNGTKKYRKCKESKLINVTRKLDHGIKYLNNPKIAKDMKPKVEGQTREKKWPHLLVQRETMKELKRERHKFRDSSEKSKCKKNQFSQDYSNKIIHEPDSRKKKISFKIPIKSSNTHQKLVEENVFNLVSNKVKTKQGARQSPEGSQVSLNLTRHKDEHLLFDSTYKQTVCDHKRKYNEHQERNDSSSKKNLTQSFEAPCSSVSPENIQDTDQEMQIVEELHAARVGKSVDLTVVPPSGELMSMEIDLVEDDVHSSAANTVSDKKLLLIVIDTNILMNHLKFVRILKTTEISGFDRLVLIIPWVVVQELDRMKAGKLLKHAQHKAIPAVHFINNSLKSQDRKLWGQSIQLASQKLYGLSDENNDDRVLKCCLQYQELFPSSLVILCTDDRNLRSKGLISGVKSLSKEELSAELLTLSLNADVCHQPCISKQQLKAEAKPVEETSEKKSANSGLPIVLERLISDLERSLGTALSSILETEMKIAFGNLWMEMLYLKPPWTLIHLLQCFKKHWLAVFGLVMEKNLLLTVESLYENFCKANNAVDFTTVKFLLQDSKSLLHAFSTRSNYDGILPQAFAQISRLLQTFAEVKTKLKPNSSENTMSKTPEDAPLMKSHNQEITVFSGSHLPQSNRHQEIWSVLENVWITIYQNSTDVFQKLNSNAALTTSKIASFEEAFMYLQKLMAAVKDILEGIQRILAPNSNYQDIETLYNFLIKYEVNKHVTFTAQELYDCVSQTEYREKLTIGCRQLVEMECAMQQCNASVYMGAKNRGWCEDTFSCRT