Details from NCBI annotation

Gene Symbol Cpsf6
Gene Name cleavage and polyadenylation specific factor 6, 68kDa, transcript variant X2
Entrez Gene ID 101723861

Database interlinks

Part of NW_004624948.1 (Scaffold)

For more information consult the page for NW_004624948.1 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible homologs of the naked mole-rat gene and compared to it.

CPSF6 ENSCPOG00000015201 (Guinea pig)

Gene Details

cleavage and polyadenylation specific factor 6, 68kDa

External Links

Gene Match (Ensembl Protein ID: ENSCPOP00000013703, Guinea pig)

Protein Percentage 100.0%
CDS Percentage 97.34%
Ka/Ks Ratio 0.001 (Ka = 0.0001, Ks = 0.112)

CPSF6 ENSG00000111605 (Human)

Gene Details

cleavage and polyadenylation specific factor 6, 68kDa

External Links

Gene Match (Ensembl Protein ID: ENSP00000391774, Human)

Protein Percentage 99.82%
CDS Percentage 95.52%
Ka/Ks Ratio 0.00412 (Ka = 0.0008, Ks = 0.2016)

Cpsf6 ENSMUSG00000055531 (Mouse)

Gene Details

cleavage and polyadenylation specific factor 6

External Links

Gene Match (Ensembl Protein ID: ENSMUSP00000068408, Mouse)

Protein Percentage 99.46%
CDS Percentage 92.38%
Ka/Ks Ratio 0.00681 (Ka = 0.0025, Ks = 0.3708)

Cpsf6 ENSRNOG00000005927 (Rat)

Gene Details

cleavage and polyadenylation specific factor 6, 68kDa (Cpsf6), mRNA

External Links

Gene Match (Ensembl Protein ID: ENSRNOP00000008193, Rat)

Protein Percentage 99.64%
CDS Percentage 93.53%
Ka/Ks Ratio 0.00547 (Ka = 0.0017, Ks = 0.306)

Genome Location

Sequence Coding sequence

Length: 1656 bp    Location: 83929..56246   Strand: -
>XM_004875036.1
ATGGCGGACGGTGTGGACCACATAGACATTTACGCGGATGTGGGCGAAGAGTTCAACCAGGAAGCGGAATATGGTGGGCATGATCAGATAGATTTGTATGATGATGTCATCTCCCCATCTGCAAATAATGGAGATGCTCCAGAAGACCGGGATTACATGGATACTCTACCGCCAACTGTTGGTGATGATGTGGGCAAAGGAGCAGCACCAAATGTTGTCTATACGTATACTGGAAAGAGAATTGCATTATATATTGGAAATCTAACTTGGTGGACAACAGATGAAGACTTAACTGAAGCAGTTCATTCTTTGGGAGTAAATGATATTTTGGAGATAAAATTTTTTGAAAATCGGGCAAATGGCCAGTCAAAGGGATTTGCACTTGTTGGTGTTGGATCTGAAGCATCTTCAAAAAAGTTAATGGATCTGTTGCCTAAAAGAGAACTTCATGGCCAGAATCCTGTTGTAACTCCATGCAATAAACAGTTCCTGAGTCAATTTGAAATGCAGTCCAGGAAAACTACACAATCAGGACAAATGTCTGGGGAAGGTAAAGCTGGTCCTCCAGGAGGCAGTTCACGTGCAGCATTCCCACAAGGTGGTAGAGGACGGGGCCGTTTTCCAGGGGCTGTTCCCGGTGGGGACAGATTTCCTGGGCCAGCAGGACCAGGAGGGCCACCCCCACCTTTTCCAGCTGGACAGACTCCACCACGTCCACCATTAGGTCCCCCAGGCCCACCTGGCCCACCAGGTCCTCCACCTCCTGGTCAGGTTCTGCCACCTCCTCTAGCTGGGCCTCCTAATCGAGGAGATCGCCCTCCACCACCAGTTCTTTTTCCTGGACAGCCTTTTGGGCAGCCTCCATTGGGTCCACTTCCTCCGGGACCTCCACCTCCAGTTCCAGGTTATGGCCCTCCTCCTGGCCCACCACCTCCACAGCAGGGACCGCCGCCACCTCCAGGCCCCTTTCCACCTCGCCCACCTGGTCCGCTTGGGCCACCCCTTACACTTGCTCCTCCTCCACATCTTCCGGGACCACCTCCAGGTGCCCCACCGCCAGCTCCACATGTGAATCCAGCTTTCTTTCCTCCACCAACTAACAGCGGCATGCCTACATCAGATAGTCGAGGTCCACCACCAACAGACCCATATGGCCGCGCTCCACCATATGATAGGGGTGACTATGGCCCCCCTGGGAGGGAAATGGATACTGCGAGAACACCATTGAGTGAAGCAGAGTTTGAAGAAATCATGAATAGAAATAGGGCAATCTCAAGCAGTGCTATTTCAAGAGCTGTATCTGATGCCAGTGCTGGTGATTATGGGAGTGCTATTGAGACATTGGTAACTGCAATTTCTTTAATTAAACAATCCAAAGTATCTGCTGATGACCGTTGCAAAGTTCTTATTAGCTCTTTGCAAGATTGCCTTCATGGAATTGAATCCAAGTCATATGGTTCTGGATCGAGACGTGAACGATCAAGAGAGAGGGACCATAGTAGATCACGAGAAAAGAGTCGGCGACATAAATCCCGTAGTAGAGATCGCCATGATGATTATTATAGAGAGAGAAGCAGAGAGAGAGAGAGACACCGTGACCGAGACCGAGACCGTGACCGAGAGCGTGACCGAGAGCGAGAGTATCGTCATCGTTAG

Related Sequences

XP_004875093.1 Protein

Cpsf6 PREDICTED: cleavage and polyadenylation specificity factor subunit 6 isoform X2 [Heterocephalus glaber]

Length: 551 aa      View alignments
>XP_004875093.1
MADGVDHIDIYADVGEEFNQEAEYGGHDQIDLYDDVISPSANNGDAPEDRDYMDTLPPTVGDDVGKGAAPNVVYTYTGKRIALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTPCNKQFLSQFEMQSRKTTQSGQMSGEGKAGPPGGSSRAAFPQGGRGRGRFPGAVPGGDRFPGPAGPGGPPPPFPAGQTPPRPPLGPPGPPGPPGPPPPGQVLPPPLAGPPNRGDRPPPPVLFPGQPFGQPPLGPLPPGPPPPVPGYGPPPGPPPPQQGPPPPPGPFPPRPPGPLGPPLTLAPPPHLPGPPPGAPPPAPHVNPAFFPPPTNSGMPTSDSRGPPPTDPYGRAPPYDRGDYGPPGREMDTARTPLSEAEFEEIMNRNRAISSSAISRAVSDASAGDYGSAIETLVTAISLIKQSKVSADDRCKVLISSLQDCLHGIESKSYGSGSRRERSRERDHSRSREKSRRHKSRSRDRHDDYYRERSRERERHRDRDRDRDRERDREREYRHR