Sequence details NCBI ID: XM_004874955.1 (Coding sequence)   Best Hit

Details from NCBI annotation

Gene Symbol Pdzd4
Gene Name PDZ domain containing 4, transcript variant X1
Entrez Gene ID 101722812

Database interlinks

Part of NW_004624946.1 (Scaffold)

For more information consult the page for NW_004624946.1 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible homologs of the naked mole-rat gene and compared to it.

PDZD4 ENSCPOG00000019482 (Guinea pig)

Gene Details

PDZ domain containing 4

External Links

Gene Match (Ensembl Protein ID: ENSCPOP00000015904, Guinea pig)

Protein Percentage 93.73%
CDS Percentage 91.34%
Ka/Ks Ratio 0.0512 (Ka = 0.0285, Ks = 0.556)

PDZD4 ENSG00000067840 (Human)

Gene Details

PDZ domain containing 4

External Links

Gene Match (Ensembl Protein ID: ENSP00000164640, Human)

Protein Percentage 92.34%
CDS Percentage 90.18%
Ka/Ks Ratio 0.04699 (Ka = 0.033, Ks = 0.7021)

Pdzd4 ENSMUSG00000002006 (Mouse)

Gene Details

PDZ domain containing 4

External Links

Gene Match (Ensembl Protein ID: ENSMUSP00000002080, Mouse)

Protein Percentage 91.45%
CDS Percentage 86.14%
Ka/Ks Ratio 0.04264 (Ka = 0.0399, Ks = 0.9351)

Pdzd4 ENSRNOG00000037282 (Rat)

Gene Details

PDZ domain containing 4 (Pdzd4), mRNA

External Links

Gene Match (Ensembl Protein ID: ENSRNOP00000053214, Rat)

Protein Percentage 91.51%
CDS Percentage 85.68%
Ka/Ks Ratio 0.03896 (Ka = 0.0396, Ks = 1.0152)

Genome Location

Sequence Coding sequence

Length: 2403 bp    Location: 496770..477150   Strand: -
Raw sequence   
>XM_004874955.1
ATGGGATGCAGTATGTGCGTGGTCCAGAAACCGGAGGAGCAATACAAAGTCATGCTTCAGAGCCGGGGAGCAGCTGGAAGCCCGCAAGCGTGGGGTGCAGAACCGCATGGTGCCCTGGACATCGTCCCGGGGATGAATGGTCACTCCTGCACCCCAGCCCAGGTGAACGGGAAGGAGCTCTCCAAGCTGTCTCAGGAGCAGACGCTGGAGGCCCTTCGTACCTCCAAGGAGCCCCTGGTCATCCAGGTGCTGAGACGCAGCCCCCGCCTGCGGGGGGACAGCTCCTGCCATGACCTGCAGCTGGTGGACAGTGGCACTCAGACCGACGTCACCTTTGAGCACATCATGGCGCTGGGCAAGCTGCGCCCGCCCACCCCGCCCATGGGCATCCTGGAGCCGTACGTCCTGTCTGAGCTCACCCCCATCAGCCATGAGTATTATGACCCGACGGAATTCACGGAGGGAGGCCCGCAGGATGAGCTGGAGTATGAGGAGGTGGAGCTTTATAAAAGCAGCCACCAAGACAAGCTGGGCCTGATGGTGTGCTACCGCACGGACGATGAGGAGGACCTGGGAATCTATGTTGGAGAGGTGAATCCCAACAGCATTGCAGCCAAAGACGGCCGGATCCGAGAGGGGGACCGAATCATCCAGATTAACGGCATGGACGTCCAGAACCGAGAAGAGGCAGTGGCCATCCTGAGCCAGGAGGAGAACACCAACATCTCCCTGCTGGTGGCTCGGCCTGAGAGCCAGCTGGCAAAACGGTGGAAGGACAGTGACCGGGATGACTTCCTGGATGACTTTGGCTCTGAGAATGAGGGGGACCTGTGTGCTCGGAAGCTGAAATCACCTCCTGCCCAGCAGCTCGGAAACGAGGAGGACAAGGGGGCCCCAGATGCAGGCCCAGGCCTGAGCAACAGCCAGGAGCTGGACAGCGGGGTGGGCCGCACTGATGAGAGCACGCGCAATGAAGAGAGCTCGGAGCACGACCTGCTGGGGGACGAGCCCCCCAGTGCCACCAACACCCCAGGGACCCTGCGCAAGTTCGGCCTGCAAGGGGACTTGCACTTCAGCATGGACTCGCTGCTGGCTGAGGCTGCGGGGCTGGGCGCAGGGGATGTGCCTGGCCTCACGGATGAGGAGTACGAGCGCTACCGGGAGCTGCTGGAGATCAAGTGCCACCTGGAGAATGGCAACCAGCTGGGCCTGCTCTTCGCGCGGGCCTCGGCAGGCAACGGTGCCCTGGACGTCAACCGCAACGAGAGCCTGGGCCACGAGATGGCCATGCTGGAGGAGGAGCTGAGGCACCTGGAGTTCAAGTGCCGCAACATCCTGCGCGCGCAGAAGATGCAGCAGCTGCGGGAACGCTGCATGAAGGCCTGGCTGCTGGAGGAGGAGAGCCTGTACGACCTGGCAGCTGGTGAGCCCAAGAAGCACGAGCTGTCCGACATCTCCGAGCTGCCAGAGAAGTCCGACAAGGACAGCACCAGCGCCTACAACACAGGGGAGAGCTGCCGCAGCACGCCACTGCTTGTGGAGCCCCCGCCGGAGAGCCCCCTGAAGCGGGCTGCCGCTGCCGCCGCCGGCAACTCCAACTTGAACCGGACCCTCCCCGGCCCCCCGATCACTGGCCCCCCCAAGACGACCGCCACGCCTGGAAGCCCGGCCAAGTTCCGCTCCCTCTCCCGGGACCCCGAGGCAGGCCGGAGGCAGCATTCGGAGGAGCGCGTCCGCCGCAGCCCCAAGGCCGGGGTGGCCTTGGAGCAGGTGGGCCCCGAAGGCAGCCCTTACCTGTTGCGGCGCCACCCTGGCCAGGGCCAGGAGAGCGAGCACTACCACAGCTGCATGCAGCTGACCCCGCCGCGCAGCCTAGAGGAGCTGGGCCGCGGCGCCTTGGGCCTGGCCGGTGGCCCCCGGGTGTGTGGCGTGGCAGCCTCGGTGGAAGCGCCTCGCATGGAGTGGAAGGTGAAGGTGCGCAGCGATGGCACCCGCTACGTGGCCAAGAGGCCTGTGCGCGACCGGCTGCTGAAGGCCCGGGCCCTGAAGATCCGGGAGGAGCGCAGCGGCATGACCACCGACGACGATGCGGTGAGCGAGATGAAGATGGGCCGCTACTGGAGCAAGGAGGAGCGCAAGCAGCACCTGATCCGCGCTCGGGAGCAGCGGAAGCGCCGCGAGTTCATGATGCAGAGCCGGCTGGAGTGCCTGCGGGAGCAGCAGAGTGGCGACAGCAAGCCTGAGCTCAACATCATCGCGCTGAGCCACCGCAAGACCATGAAGAAGCGGAACAAGAAGATCCTGGACAACTGGATCACCATCCAGGAGATGCTGGCCCACGGTGCACGCTCGGCAGACGGCAAGCGGGTCTACAACCCCCTGCTGTCAGTCACCACTGTCTGA

Related Sequences

XP_004875012.1 Protein

Pdzd4 PREDICTED: PDZ domain-containing protein 4 isoform X1 [Heterocephalus glaber]

Length: 800 aa      View alignments
>XP_004875012.1
MGCSMCVVQKPEEQYKVMLQSRGAAGSPQAWGAEPHGALDIVPGMNGHSCTPAQVNGKELSKLSQEQTLEALRTSKEPLVIQVLRRSPRLRGDSSCHDLQLVDSGTQTDVTFEHIMALGKLRPPTPPMGILEPYVLSELTPISHEYYDPTEFTEGGPQDELEYEEVELYKSSHQDKLGLMVCYRTDDEEDLGIYVGEVNPNSIAAKDGRIREGDRIIQINGMDVQNREEAVAILSQEENTNISLLVARPESQLAKRWKDSDRDDFLDDFGSENEGDLCARKLKSPPAQQLGNEEDKGAPDAGPGLSNSQELDSGVGRTDESTRNEESSEHDLLGDEPPSATNTPGTLRKFGLQGDLHFSMDSLLAEAAGLGAGDVPGLTDEEYERYRELLEIKCHLENGNQLGLLFARASAGNGALDVNRNESLGHEMAMLEEELRHLEFKCRNILRAQKMQQLRERCMKAWLLEEESLYDLAAGEPKKHELSDISELPEKSDKDSTSAYNTGESCRSTPLLVEPPPESPLKRAAAAAAGNSNLNRTLPGPPITGPPKTTATPGSPAKFRSLSRDPEAGRRQHSEERVRRSPKAGVALEQVGPEGSPYLLRRHPGQGQESEHYHSCMQLTPPRSLEELGRGALGLAGGPRVCGVAASVEAPRMEWKVKVRSDGTRYVAKRPVRDRLLKARALKIREERSGMTTDDDAVSEMKMGRYWSKEERKQHLIRAREQRKRREFMMQSRLECLREQQSGDSKPELNIIALSHRKTMKKRNKKILDNWITIQEMLAHGARSADGKRVYNPLLSVTTV