Sequence details NCBI ID: XM_004874882.1 (Coding sequence)   Best Hit

Details from NCBI annotation

Gene Symbol Smpd4
Gene Name sphingomyelin phosphodiesterase 4, neutral membrane (neutral sphingomyelinase-3), transcript variant X3
Entrez Gene ID 101699020

Database interlinks

Part of NW_004624945.1 (Scaffold)

For more information consult the page for NW_004624945.1 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible homologs of the naked mole-rat gene and compared to it.

SMPD4 ENSCPOG00000008273 (Guinea pig)

Gene Details

sphingomyelin phosphodiesterase 4, neutral membrane (neutral sphingomyelinase-3)

External Links

Gene Match (Ensembl Protein ID: ENSCPOP00000007438, Guinea pig)

Protein Percentage 94.2%
CDS Percentage 92.18%
Ka/Ks Ratio 0.12376 (Ka = 0.0312, Ks = 0.2523)

SMPD4 ENSG00000136699 (Human)

Gene Details

sphingomyelin phosphodiesterase 4, neutral membrane (neutral sphingomyelinase-3)

External Links

Gene Match (Ensembl Protein ID: ENSP00000386531, Human)

Protein Percentage 91.54%
CDS Percentage 88.03%
Ka/Ks Ratio 0.0831 (Ka = 0.0433, Ks = 0.5206)

Smpd4 ENSMUSG00000005899 (Mouse)

Gene Details

sphingomyelin phosphodiesterase 4

External Links

Gene Match (Ensembl Protein ID: ENSMUSP00000006053, Mouse)

Protein Percentage 90.28%
CDS Percentage 86.63%
Ka/Ks Ratio 0.08921 (Ka = 0.0495, Ks = 0.5543)

Smpd4 ENSRNOG00000001875 (Rat)

Gene Details

sphingomyelin phosphodiesterase 4, neutral membrane (Smpd4), mRNA

External Links

Gene Match (Ensembl Protein ID: ENSRNOP00000047410, Rat)

Protein Percentage 90.77%
CDS Percentage 86.55%
Ka/Ks Ratio 0.0784 (Ka = 0.0462, Ks = 0.5897)

Genome Location

Sequence Coding sequence

Length: 2484 bp    Location: 592194..567259   Strand: -
Raw sequence   
>XM_004874882.1
ATGGCATTCCCTCACCTACAACAGCCTAGCTTCCTACTGGCTAGCCTGAAAGCTGACTATGTAAATAAGCCCTTTGCACAGAGGTGCCAAGACTTGGTAAAAGTCATTGAAGATTTTCCAGCAAAGGAGCTGCACACCATCTTCCCATGGCTGGTAGAGAGCATCTTCGGCAGTCTGGATGGTGTCCTCGTTGGCTGGAACCTCCGTTGCCTGCAGGGCCGTGTGAACCCTGTGGAGTACAGCATTGCAATGGAATTTCTAGATCCTGGTGGCCCAATGATGAAGTTGGTTTATAAACTTCAAGCTGAAGACTATAAATTTGACTTTCCTGTCTCCTACTTACCTGGCCCCGTGAAGGCATCCATCCAGGAGCACATCCTCCCTGACAGCGCTCTGTACCACAACAAGGTCCAGTTTCCTCCCACAGGGGGTCTTGGCCTGAACCTGGTCCTCAATCCATTTGAGTATTACATATTCTTCTTTGCCTTGAGTCTCATCACTCAGAAGCCACTATCCATGTCCCTCCATGTCCGTACTTCAGACTGTGCCTATTTCATCCTGGTGGACAGGTACCTGTCATGGTTTCTGCCCACTGAAGGCAGTGTGCCCCCTCCATTCTCCTGTAGTCCTGGTGGGGCCAGCCCATCACCTGCTCCCAGGACTCCAGCCATGCCTTTTGCCTCCTATGGCCTCCACCACACCAGCCTCCTGAAGCGACATATCTCTCATCAGACATCTGTGAATGCAGACCCTGCCTCCCAGGAGATCTGGAGATCAGAAACTCTCCTCCAGGTGTTTGTTGAAATGTGGCTTCACCATTATTCCTTGGAAATGTATCAGAAAATGCAGTCCCCTCATGCCAAGCTGGAGGTTCTGCACTACAGACTCAGTGTCTCCAGCGCCCTCCACAGCCCTGCCCAACCCAGCCTCCAAGCCCTCCACGCCTACCAAGAGTCATTCACACCCTCCGAGGAGCACGTGCTAGTGGTGCGCCTGTTGCTGAAGCACCTGCATGCCTTTGCCAACAGCCTGAAGCCTGAGCAGGCCTCGCCCTCAACCCACTCCCATGCCACCAGTCCCTTGGAGGAGTTCAAACGGGCCGCTGTCCCGAGATTTGTCCAGCGGAAGCTCTACCTCTTCCTGCAGCACTGCTTTGGCCACTGGCCCCTGGATGCTTCCTTCAGAGCTGTCCTGGAAATGTGGCTGAGCTACCTGCAGCCGTGGAGGTACGCATCTGAGAAGCAGCCTCAGAGCAGTGATTCCCAACCCCGGTGTGTGTCGGAGAAATGGGCACCCTTTGTCCAGGAGAACCTGCTGGTGTACACCAAGCTCTTCGTGAGCTTCCTAAACCGTGCACTCCGCACAGACCTGGTCAGCCCCAAGAACGCGCTCATGGTGTTCCGAGTGGCCAAAGTCTTTGCCCAGCCCAACCTGGCTGAAATGATCCAAAAAGGTGAGCAGCTATTCCTGGAGCCGGAACTCGTCATCCCCCATCGCCAGCACCGGTTCTTCACAGCTCCTACTGTCACTGGCAGCTTCCTGTCTCCGTGGCCACCAGCCATCACTGACGCCTCATTCAAGGTGAAGAGCCACGTTTACAGCCTGGAGGGCCAGGACTGCAAGTACACCCCAATGTTTGGGCCTGAGGTCCGGACCCTGGTGTTGCGCCTTGCTCAGCTCATCACACAAGCCAAGCAGACCGCCAGGTCCATCTCTGACCAGTGTGTGGAGAGCCCCCCTGGCCGGTCCTTCCTGTCATGGCTGGGCTTCTGCCCCACAGACCCAAACAGCTATTACCCAGCCAACGACCTGGACGAGATGGGCCAGGACAGCATCCGCAAGACAGATGAGTACCTAGAGAAGGCCCTGGAGTACCTGCGCCAGATATTCCGACTCAGTGAAGCCCAGCTCGCCCAGCTCACACTCACCCTGGGGACGACGCAGGACGAAAATGGGAAGAAACAACTCCCAGACTGCATCGTGGGGGAGGATGGGCTCATCCTCACAGCCCTGGGCCGCTACCAAATCATCAATGGGCTGCGGAGGTTTGAAATTGAGTACCAGGGGGACTCAGAGCTACAGCCCATCCGGAGCTACGAGAATGCCAGCCTAGTCCGAGCACTCTTCCGGCTGTCATCTGCCATCAACCGTAGATTTGCAGGCCAGATGGTTGCTCTGTGTTCCCGGGATGACTTCCTTGGCAGCTTCTGTCGATACCATCTCATTGAGCCTACACTGGCCAACAGGCACCTGCTGAGCCCCGTGGGGCAGAGGCAGGCGGCCAGCCATGCTCGGGGCCCCAGACTCAGCCTGCGCTTCCTGGGCAGCTACCGAACACTACTCTTCCTCTTGCTGGCCTTCATCGTGGCCTCTCTGTTATGCATCAGACCCCTACCCTGCACCCTGCTCCTTGTCCTGGGCTACCTCCTCTATGCCATAGCCATGACATTGCTGACAGAACGGGGAAAACTTCACCAGCCCTGA

Related Sequences

XP_004874939.1 Protein

Smpd4 PREDICTED: sphingomyelin phosphodiesterase 4-like isoform X3 [Heterocephalus glaber]

Length: 827 aa      View alignments
>XP_004874939.1
MAFPHLQQPSFLLASLKADYVNKPFAQRCQDLVKVIEDFPAKELHTIFPWLVESIFGSLDGVLVGWNLRCLQGRVNPVEYSIAMEFLDPGGPMMKLVYKLQAEDYKFDFPVSYLPGPVKASIQEHILPDSALYHNKVQFPPTGGLGLNLVLNPFEYYIFFFALSLITQKPLSMSLHVRTSDCAYFILVDRYLSWFLPTEGSVPPPFSCSPGGASPSPAPRTPAMPFASYGLHHTSLLKRHISHQTSVNADPASQEIWRSETLLQVFVEMWLHHYSLEMYQKMQSPHAKLEVLHYRLSVSSALHSPAQPSLQALHAYQESFTPSEEHVLVVRLLLKHLHAFANSLKPEQASPSTHSHATSPLEEFKRAAVPRFVQRKLYLFLQHCFGHWPLDASFRAVLEMWLSYLQPWRYASEKQPQSSDSQPRCVSEKWAPFVQENLLVYTKLFVSFLNRALRTDLVSPKNALMVFRVAKVFAQPNLAEMIQKGEQLFLEPELVIPHRQHRFFTAPTVTGSFLSPWPPAITDASFKVKSHVYSLEGQDCKYTPMFGPEVRTLVLRLAQLITQAKQTARSISDQCVESPPGRSFLSWLGFCPTDPNSYYPANDLDEMGQDSIRKTDEYLEKALEYLRQIFRLSEAQLAQLTLTLGTTQDENGKKQLPDCIVGEDGLILTALGRYQIINGLRRFEIEYQGDSELQPIRSYENASLVRALFRLSSAINRRFAGQMVALCSRDDFLGSFCRYHLIEPTLANRHLLSPVGQRQAASHARGPRLSLRFLGSYRTLLFLLLAFIVASLLCIRPLPCTLLLVLGYLLYAIAMTLLTERGKLHQP