Details from NCBI annotation

Gene Symbol Vsx1
Gene Name visual system homeobox 1
Entrez Gene ID 101722463

Database interlinks

Part of NW_004624939.1 (Scaffold)

For more information consult the page for NW_004624939.1 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible homologs of the naked mole-rat gene and compared to it.

VSX1 ENSCPOG00000003951 (Guinea pig)

Gene Details

visual system homeobox 1

External Links

Gene Match (Ensembl Protein ID: ENSCPOP00000003568, Guinea pig)

Protein Percentage 66.44%
CDS Percentage 71.35%
Ka/Ks Ratio 0.31245 (Ka = 0.2717, Ks = 0.8695)

VSX1 ENSG00000100987 (Human)

Gene Details

visual system homeobox 1

External Links

Gene Match (Ensembl Protein ID: ENSP00000365899, Human)

Protein Percentage 63.18%
CDS Percentage 69.82%
Ka/Ks Ratio 0.34527 (Ka = 0.2992, Ks = 0.8666)

Vsx1 ENSMUSG00000033080 (Mouse)

Gene Details

visual system homeobox 1 homolog (zebrafish)

External Links

Gene Match (Ensembl Protein ID: ENSMUSP00000039088, Mouse)

Protein Percentage 60.35%
CDS Percentage 66.78%
Ka/Ks Ratio 0.27921 (Ka = 0.3228, Ks = 1.156)

Vsx1 ENSRNOG00000042220 (Rat)

Gene Details

visual system homeobox 1 (Vsx1), mRNA

External Links

Gene Match (Ensembl Protein ID: ENSRNOP00000058189, Rat)

Protein Percentage 57.48%
CDS Percentage 65.87%
Ka/Ks Ratio 0.31275 (Ka = 0.349, Ks = 1.1158)

Genome Location

Sequence Coding sequence

Length: 891 bp    Location: 356709..381595   Strand: +
>XM_004874785.1
ATGGTGGTCCTGTGCCAAATGTTGGGAGTGTCCACTTACAAGCTCTCCATCCAGCCCTTCATGGAAGCTTGGAATCTTCTGGATCCTCCAGATGTGGGTTCTGGAGCTCCAGATGAGCTGGTGCTGGGCTCTGTTGAGCACTGGGTGCTTTTGGCCCCGATCGTATGCTGGACCCTGGTACCCAGGTTCAGTGTGAGAGGGCTGCTGGTGGCACGGGACACGCGGGAACTAAAGCCTCGCTGGGATGAGGACAGTCTGTCTGAAGACAGAAGTGACCTGAAGGCATCCCCTGGCCTGGGCAAGAGGAAAAAGCGGCGGCACAGGACAGTCTTTACTGCTCAGCAGCTGGAAGAGCTGGAGAAGGCTTTTGGAGAAGCCCACTACCCTGATGTCTATGCCCGGGAAATGCTGGCCCTGAAAACCCAGCTTCCTGAAGACAGGATACAGGTCTGGTTCCAGAACCGCCGGGCCAAGTGGCGCAAGCGAGAGAAGCGCTGGGGCGGCAGCAGCGTGATGGCTGAGTACGGGCTGTACGGGGCTCTGGTGCGGCACTGCCTCCCGCTGCCCGGCGCGGTGCTCGGCGCGGTCCAAGGCCGCCCGCCGGGGTGCTGTGCGCCCTGGCTGCTGGGGATCCATAAAAAATCCACGGGGATGATAAGGAAGCCAGGAAGCGAGGACAAGGTGGCAGGACTCTGGGGCTCCGACCATCTTCACAAAGGTCCTCACAGAGGCTCAGACACAATGGGACCTGAGAATGCAGATGTGGCCATGGATCTGTCCAGTTCTGCCCGGCAGGAGACCAGGCAGGCTCGGCAGGGGGCTGAGGCTCAAGGACGCTCTGATCCTGAGGGGCTCCAGGGGTTCCAGCCTGGGATAGTGGGAGCCTTATGA

Related Sequences

XP_004874842.1 Protein

Vsx1 PREDICTED: visual system homeobox 1 [Heterocephalus glaber]

Length: 296 aa      View alignments
>XP_004874842.1
MVVLCQMLGVSTYKLSIQPFMEAWNLLDPPDVGSGAPDELVLGSVEHWVLLAPIVCWTLVPRFSVRGLLVARDTRELKPRWDEDSLSEDRSDLKASPGLGKRKKRRHRTVFTAQQLEELEKAFGEAHYPDVYAREMLALKTQLPEDRIQVWFQNRRAKWRKREKRWGGSSVMAEYGLYGALVRHCLPLPGAVLGAVQGRPPGCCAPWLLGIHKKSTGMIRKPGSEDKVAGLWGSDHLHKGPHRGSDTMGPENADVAMDLSSSARQETRQARQGAEAQGRSDPEGLQGFQPGIVGAL