Sequence details NCBI ID: XM_004874783.1 (Coding sequence)   Best Hit

Details from NCBI annotation

Gene Symbol Syndig1
Gene Name synapse differentiation inducing 1, transcript variant X2
Entrez Gene ID 101720110

Database interlinks

Part of NW_004624939.1 (Scaffold)

For more information consult the page for NW_004624939.1 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible homologs of the naked mole-rat gene and compared to it.

SYNDIG1 ENSCPOG00000004943 (Guinea pig)

Gene Details

synapse differentiation inducing 1

External Links

Gene Match (Ensembl Protein ID: ENSCPOP00000004450, Guinea pig)

Protein Percentage 91.16%
CDS Percentage 88.35%
Ka/Ks Ratio 0.05088 (Ka = 0.0427, Ks = 0.839)

SYNDIG1 ENSG00000101463 (Human)

Gene Details

synapse differentiation inducing 1

External Links

Gene Match (Ensembl Protein ID: ENSP00000366058, Human)

Protein Percentage 86.75%
CDS Percentage 85.14%
Ka/Ks Ratio 0.06357 (Ka = 0.0721, Ks = 1.1334)

Syndig1 ENSMUSG00000074736 (Mouse)

Gene Details

synapse differentiation inducing 1

External Links

Gene Match (Ensembl Protein ID: ENSMUSP00000105560, Mouse)

Protein Percentage 87.55%
CDS Percentage 82.33%
Ka/Ks Ratio 0.05485 (Ka = 0.0703, Ks = 1.2815)

Syndig1 ENSRNOG00000031536 (Rat)

Gene Details

synapse differentiation inducing 1 (Syndig1), mRNA

External Links

Gene Match (Ensembl Protein ID: ENSRNOP00000060788, Rat)

Protein Percentage 86.75%
CDS Percentage 82.6%
Ka/Ks Ratio 0.05754 (Ka = 0.0714, Ks = 1.241)

Genome Location

Sequence Coding sequence

Length: 774 bp    Location: 661025..560230   Strand: -
Raw sequence   
>XM_004874783.1
ATGCCTGGCATGGAAGCCAGCACCATGGACGGCCCTGCCGGGCCAAAGAGTGAGCTGGCGTGCAGCAAGGTCCTGGACACTGGCCCAAGGAATGGGCTCATCAACACCAGAAACTTCATGGCCGAGAACAGGGATGGCCTGGTGTCCATGTACCCAACGCCCCAGTACCAGAGCCACCGGAGCATGGACAGTGGGGGGAAAGAGTCTGCGCAGCAGCTGCTGGACCCCAACGCCCTGCAGAGGTCAGTGGAGTCACGGTACCGGCCCAACCTCATTCTCTACTCTGAGGGCATGCTGCGCTCCTGGGGAGACGGTGTGGCCACCGACTGCTGTGAGACCACCTTCATCGAGGACCGGTCGCCCACCAAAGACAGCCTGGAGTATCCTGATGGGAAGTTCCTGGACCTTTCTCCTGATGACATCAAGATCCACACACTGTCCTACGATGTGGAGGAGGAGGAGCTACAGGAGCTGGAGAGTGACTACTCCAGTGACACAGAGAGCGAGGACAACTTCCTCATGATGCCCCCACGGGACCACCTGGGGCTCAGCGTCTTCTCCATGCTCTGCTGCTTCTGGCCACTGGGCATTGCAGCCTTCTACCTGTCCCACGAGACGAATAAGGCCGTGGCTCAAGGTGACTTCCACCAGGCTAGCACCAGCTCCCGGCGCGCCCTCTTCCTGGCCGTGCTGTCCATCACCATCGGCACGGGCATCTACGTGGGTGTTGCTGTCGCCCTCATCGCCTACCTCTCCAAGAGCAACCACCTGTGA

Related Sequences

XP_004874840.1 Protein

Syndig1 PREDICTED: synapse differentiation-inducing gene protein 1 isoform X2 [Heterocephalus glaber]

Length: 257 aa      View alignments
>XP_004874840.1
MPGMEASTMDGPAGPKSELACSKVLDTGPRNGLINTRNFMAENRDGLVSMYPTPQYQSHRSMDSGGKESAQQLLDPNALQRSVESRYRPNLILYSEGMLRSWGDGVATDCCETTFIEDRSPTKDSLEYPDGKFLDLSPDDIKIHTLSYDVEEEELQELESDYSSDTESEDNFLMMPPRDHLGLSVFSMLCCFWPLGIAAFYLSHETNKAVAQGDFHQASTSSRRALFLAVLSITIGTGIYVGVAVALIAYLSKSNHL