Sequence details NCBI ID: XM_004874683.1 (Coding sequence)   Best Hit

Details from NCBI annotation

Gene Symbol Ppfibp1
Gene Name PTPRF interacting protein, binding protein 1 (liprin beta 1), transcript variant X2
Entrez Gene ID 101715740

Database interlinks

Part of NW_004624935.1 (Scaffold)

For more information consult the page for NW_004624935.1 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible homologs of the naked mole-rat gene and compared to it.

PPFIBP1 ENSCPOG00000006847 (Guinea pig)

Gene Details

PTPRF interacting protein, binding protein 1 (liprin beta 1)

External Links

Gene Match (Ensembl Protein ID: ENSCPOP00000006172, Guinea pig)

Protein Percentage 94.12%
CDS Percentage 93.74%
Ka/Ks Ratio 0.15637 (Ka = 0.0284, Ks = 0.1813)

PPFIBP1 ENSG00000110841 (Human)

Gene Details

PTPRF interacting protein, binding protein 1 (liprin beta 1)

External Links

Gene Match (Ensembl Protein ID: ENSP00000314724, Human)

Protein Percentage 91.03%
CDS Percentage 90.27%
Ka/Ks Ratio 0.14024 (Ka = 0.0447, Ks = 0.3185)

Ppfibp1 ENSMUSG00000016487 (Mouse)

Gene Details

PTPRF interacting protein, binding protein 1 (liprin beta 1)

External Links

Gene Match (Ensembl Protein ID: ENSMUSP00000107250, Mouse)

Protein Percentage 88.46%
CDS Percentage 85.46%
Ka/Ks Ratio 0.11271 (Ka = 0.0636, Ks = 0.5639)

Ppfibp1 ENSRNOG00000031709 (Rat)

Gene Details

PTPRF interacting protein, binding protein 1 (liprin beta 1) (Ppfibp1), mRNA

External Links

Gene Match (Ensembl Protein ID: ENSRNOP00000039655, Rat)

Protein Percentage 87.5%
CDS Percentage 83.81%
Ka/Ks Ratio 0.11112 (Ka = 0.0717, Ks = 0.6454)

Genome Location

Sequence Coding sequence

Length: 2946 bp    Location: 594656..392351   Strand: -
Raw sequence   
>XM_004874683.1
ATGATGAATGATGCAAGTGACATGTTGGCTGCGGCATTGGAACAGATGGATGGTATTATAGCAGGTTCTAAGGCCTTGGAATATTCCAATGGGATTTTTGATTGTCAGTCTCCCACCTCTCCCTTCATGGGCAGCTTGCGAGCTCTGCACCTTGTGGAAGACCTGCGTGGATTATTAGAGATGATGGAAACAGATGAGAAGGAAGGCTTGAGATGCCAGATCCCAGATTCAACAGCAGAGACACTTATTGAATGGCTTCAGAGTCAAATGACAAATGGACACCTACTTGGGAACGGAGATATGTATCAAGAAAGGCTAGCACGCTTAGAAAATGATAAAGAGTCCCTTGTTCTTCAGGTAAGCGTGTTAACAGACCAGGTGGAGGCTCAAGGAGAAAAGATTCGAGATTTGGAATACTGTCTTGAAGAGCACAGAGAGAAGTTGAATGCCACAGAAGAAATGCTGCAGCAGGAGCTTCTGAGTAGGACATCCTTAGAAACCCAAAAGTTGGATCTGATGGCTGAAATATCTAACTTGAAGTTAAAATTGACAGCTGTAGAGAAGGACAGACTGGATTATGAAGACAGGTTCAGAAACACAGAAGGACTAATACAGGAGATCAATGATTTGAGATTAAAAGTTGATGAAATGGACAGTGAAAGACTTCAGTATGAAAAAAAGCTTAAATCAGCCAAAGATGAACTGGCATCTTTAAAAGAGCAACTAGAAGAGAAAGAAGCTGAAGTAAAAAAGCTACAAGAGAAATTGGTTTGCAAGATGAAAGGAGAAGGGATTGAAATTCTTGATAAAGATGAAAATTTTAAAAAGAAGCTCAAAGAAAAAAATATTGAAGTACAAAAAATGAAAAAGGCTGTGGAATCTTTGATGGCAGCAAATGAAGAAAAGGACCAGAAAATAGAAGATCTCCGACAGTGCCTGAACAAGTACAAGAAAATGCAAGACACAGTGGTACTCCCTCAAGGCAGAGATGGTGAATATGAAGACCTGTTCAATTCCAGTCCCATCTCCACTTTGTTGGATACACAGGGCTTTAGTGATCTGGAAAAAAGTCCATCCACTTCTCCAGTAACGGCATCTCCCAGCCATGACCCATTCAACACAAGTATTCCAGAAGAGCTCCACACCAGCATCTTGCAAGTTTCAATCCCTTCATTATTGCCAGAATCCATAGGCATGGAAACTGCTGAAAAATCAAAATTGCCTCCTAAGCCGGAGACTTCATTTGAAGAGAATGATGGAAAAATAACCCTTGGTGCTGCTGTTGAAACCCAGCTGGGTGACAGTATTTTAACTTCAAGTCTACAAAAATCCAGCAGCCTGGGAAATCTGAAGAAAGAGACATCAGATGGGGATAAAGCTCCAGGAGAAAATAGCATGTTTGGGAGTCTCCCTCCCAAAGCTGCAGGCCATGAGGCCTCTGTGGATGACAACACTTTTGGCACTCGAAAAGTCAGATCTTCTTTTGGTCGGGGCTTTTTTAAAATCAAAAGTAACAAGAGGACAGCAAGTGAACCAAACTTGGCTGAAACAGAAAAGGAGACAGCAGAGCACCTGGATCTGGCTGCTGCATCTTCTCAGCCCAGAGATTCACAGGGGAACAGTACCTTCCAGATGTCTCCACTTTCTCCAGATTCCAAAAAGAAATCCAGAGGTATCAGGAGACTCTTTGGAAAACTTAGGAGAAGTCAATCGACCACATTCAACCCAGAAGACATGTCTGAACCTGAATTCAAAAGAGGAGGGACAAGGGCAACTGCAGGTCCTCGGTTGGGTTGGTCTCGTGATCTGGGACAGACTAACAGTGACTTGGATATGCCTTTTGCCAAATGGACCAAGGAGCAAGTTTGTACTTGGCTGGTGGAACAGGGGTTGGGGTCCTACCTGAATTCTGGCAAACACTGGATTGCATCTGGTCAAACCCTTTTGCAGGCTTCTCAACAAGATTTAGAGAAGGAACTTGGAATCAAGCATTCACTTCATAGAAAGAAACTCCAGCTGGCATTGCAAGCCCTAGGATCTGAAGAAGAAACCAATCACGGAAAGCTGGATTTCAACTGGGTCACTAGATGGTTGGATGATATTGGCCTTCCCCAGTATAAGACCCAGTTTGATGAAGGACGAGTGGATGGTCGAATGCTCCATTACATGACTGTTGATGACTTACTGTCTGTGAAGGTTGTGAGTGTGCTGCACCATCTCAGTATCAAAAGGGCCATCCAAGTTCTGAGGATCAATAACTTTGAACCAAATTGCCTACGGAGGCGGCCGTCAGATGAGAGTAACATTACCCCATCTGAAGTTCAGCAGTGGACAAATCATCGTGTGATGGAGTGGCTGCGCTCAGTGGACTTGGCTGAATATGCCCCCAACCTCAGAGGCAGTGGGGTCCATGGTGGACTCATGGTGCTAGAACCTCGTTTTAATGTAGAAACAATGGCTCAGTTATTAAACATTCCACCAAATAAAACGCTGTTGAGAAGACACTTGGCCACTCATTTCAACCTTCTGATTGGTGCTGAGGCCCAACATCAGAAGCGAGATGCCATGGAGTTACCAGATTATGTACTTTTAACAGCTACTGCCAAAGTGAAGCCAAAGAAACTTAGCTTCAGCAATTTTGGGAATCTGAGAAAGAAGAAACAGGAAGATGGAGAAGAATATGTTTGTCCGATGGAATTGGGACAGGCATCAGGAAGTGTCTCAAAGAAAGGATTTAAGCCTGGTTTGGACATGCACCTGTATGATGAAGATGATTTCGATCGGTTAGACCAGATGGAAGATTCAGAAGGGACAGTGAGACAGATAGGTGCATTTTCTGAAGGCATCAACAATCTAACACACATGTTAAAAGAAGATGATATGTTTAAAGATTTTGCTGCCTGTTCCCCCAGTGCCAGTATTACAGATGAAGATTCAAACATTTAA

Related Sequences

XP_004874740.1 Protein

Ppfibp1 PREDICTED: liprin-beta-1 isoform X2 [Heterocephalus glaber]

Length: 981 aa      View alignments
>XP_004874740.1
MMNDASDMLAAALEQMDGIIAGSKALEYSNGIFDCQSPTSPFMGSLRALHLVEDLRGLLEMMETDEKEGLRCQIPDSTAETLIEWLQSQMTNGHLLGNGDMYQERLARLENDKESLVLQVSVLTDQVEAQGEKIRDLEYCLEEHREKLNATEEMLQQELLSRTSLETQKLDLMAEISNLKLKLTAVEKDRLDYEDRFRNTEGLIQEINDLRLKVDEMDSERLQYEKKLKSAKDELASLKEQLEEKEAEVKKLQEKLVCKMKGEGIEILDKDENFKKKLKEKNIEVQKMKKAVESLMAANEEKDQKIEDLRQCLNKYKKMQDTVVLPQGRDGEYEDLFNSSPISTLLDTQGFSDLEKSPSTSPVTASPSHDPFNTSIPEELHTSILQVSIPSLLPESIGMETAEKSKLPPKPETSFEENDGKITLGAAVETQLGDSILTSSLQKSSSLGNLKKETSDGDKAPGENSMFGSLPPKAAGHEASVDDNTFGTRKVRSSFGRGFFKIKSNKRTASEPNLAETEKETAEHLDLAAASSQPRDSQGNSTFQMSPLSPDSKKKSRGIRRLFGKLRRSQSTTFNPEDMSEPEFKRGGTRATAGPRLGWSRDLGQTNSDLDMPFAKWTKEQVCTWLVEQGLGSYLNSGKHWIASGQTLLQASQQDLEKELGIKHSLHRKKLQLALQALGSEEETNHGKLDFNWVTRWLDDIGLPQYKTQFDEGRVDGRMLHYMTVDDLLSVKVVSVLHHLSIKRAIQVLRINNFEPNCLRRRPSDESNITPSEVQQWTNHRVMEWLRSVDLAEYAPNLRGSGVHGGLMVLEPRFNVETMAQLLNIPPNKTLLRRHLATHFNLLIGAEAQHQKRDAMELPDYVLLTATAKVKPKKLSFSNFGNLRKKKQEDGEEYVCPMELGQASGSVSKKGFKPGLDMHLYDEDDFDRLDQMEDSEGTVRQIGAFSEGINNLTHMLKEDDMFKDFAACSPSASITDEDSNI