Details from NCBI annotation

Gene Symbol Lrrc42
Gene Name leucine rich repeat containing 42
Entrez Gene ID 101704246

Database interlinks

Part of NW_004624934.1 (Scaffold)

For more information consult the page for NW_004624934.1 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible homologs of the naked mole-rat gene and compared to it.

LRRC42 ENSCPOG00000008732 (Guinea pig)

Gene Details

leucine rich repeat containing 42

External Links

Gene Match (Ensembl Protein ID: ENSCPOP00000007839, Guinea pig)

Protein Percentage 93.62%
CDS Percentage 92.91%
Ka/Ks Ratio 0.16217 (Ka = 0.0321, Ks = 0.1977)

LRRC42 ENSG00000116212 (Human)

Gene Details

leucine rich repeat containing 42

External Links

Gene Match (Ensembl Protein ID: ENSP00000360421, Human)

Protein Percentage 87.38%
CDS Percentage 88.01%
Ka/Ks Ratio 0.25075 (Ka = 0.0764, Ks = 0.3046)

Lrrc42 ENSMUSG00000028617 (Mouse)

Gene Details

leucine rich repeat containing 42

External Links

Gene Match (Ensembl Protein ID: ENSMUSP00000030360, Mouse)

Protein Percentage 84.8%
CDS Percentage 83.61%
Ka/Ks Ratio 0.1498 (Ka = 0.0872, Ks = 0.5819)

Lrrc42 ENSRNOG00000009983 (Rat)

Gene Details

leucine rich repeat containing 42 (Lrrc42), mRNA

External Links

Gene Match (Ensembl Protein ID: ENSRNOP00000013575, Rat)

Protein Percentage 86.22%
CDS Percentage 85.11%
Ka/Ks Ratio 0.14669 (Ka = 0.0758, Ks = 0.517)

Genome Location

Sequence Coding sequence

Length: 1287 bp    Location: 531574..511535   Strand: -
>XM_004874651.1
ATGTCGTACTACCTCACCTCAGAAAAGCACCTGGACCCAGGGCCCATCTACGTGCGAGAGAATGGGCAGCTGCACACGGTCGGCCTGGCTCGAGGTGGCGTCAGGAGCAGCCTGAAGAGGCCCAATCCTTTCAGACTGTTCCCCAAAGGCTTCTCTGTGGAGCTTTGCATGAACAGGGAAGACGACACTGCTCAGAAAGAGAAGACGGATCACTTCATCTTCACGTACACCCGGGAGGGGAACCTTCGGTACTCTGCCAAATCCCTCTTCAGCCTCGTTCTGGGCTTCATCTCTGACAATGTGGATCACATTGATTCCCTCATTGGCTTTCCTGAGCAGATTGCTGAAAAGCTGTTCTCTGCTGCTGAAGCCAGACAGAAATTCACACAGCCAGGTGCAGGCCTGCGGGCTTTACAGAAATTCACAGAGGCCTACGGGAATCTGGTGCTCTGTTCCCTGTGCTTGCGGAACAGATATCTGGTGATTTCAGAAAAGCTTGAGGAGATTAAGTCCTTCCGGGAGCTGACCCGCCTGGATCTTTCCTGTTGCAAACTTGGAGATGAGCATGAACTCCTAGAACATCTCACCAGTGAGGCCCTGTCCAGTATAACTCAGCTCCACCTGAAGGATAATTGTTTATCTGATGCTGGGGTGCGGAAAATGACAGCACCAATTCGTGTGATGCAAAGAGGCCTTGAGAACCTAACATTGTTAGACTTATCTTGTAACCCTGACATCACAGATGCAGGAATTGGATACCTCTTTTCTTTTAGAAAACTAAACCGTTTAGATATCTCTGGAACGGGACTCAAGGATATCAAAACTGTCAAGCACAAACTTCAGACTCGCATAGGCCTTGTTCATTCCAAAGTGCCTTTGAAGGAATTTGATCATGGTAACTGCAAGACAGAGGGCTGGGCCGACCAGATTGTCCTGCAGTGGGATCGATTGATTGTGGAAGCCTTGAAGCCGTCAAGTGTCCCTGAACCTCGAAAGACAGCTCAGTACTTCTATCAGAATCGAGCTCTAGTGGAAGCCTCGAGGATATGCGCGCTGGCAGACACCCACATGAAATCTTCTGGAAAACTCCAGTTCTACAAAGAGAAAGCCCTGGACTGCCGAGGGCCATTGTTGAAGCATGAAGCTTCCTCCAACCAAGAGTCAAAGAAGAGCAAGAAGAGAACTTTTGAGGAGTCAGAGCAGGAACAGAATAATTCTTCACAGGCTTCAAAGCAGAAATATATGTGTCTTGCTGTGGAAGACTGGGACTTGTTAAACTCCTACTGA

Related Sequences

XP_004874708.1 Protein

Lrrc42 PREDICTED: leucine-rich repeat-containing protein 42 [Heterocephalus glaber]

Length: 428 aa      View alignments
>XP_004874708.1
MSYYLTSEKHLDPGPIYVRENGQLHTVGLARGGVRSSLKRPNPFRLFPKGFSVELCMNREDDTAQKEKTDHFIFTYTREGNLRYSAKSLFSLVLGFISDNVDHIDSLIGFPEQIAEKLFSAAEARQKFTQPGAGLRALQKFTEAYGNLVLCSLCLRNRYLVISEKLEEIKSFRELTRLDLSCCKLGDEHELLEHLTSEALSSITQLHLKDNCLSDAGVRKMTAPIRVMQRGLENLTLLDLSCNPDITDAGIGYLFSFRKLNRLDISGTGLKDIKTVKHKLQTRIGLVHSKVPLKEFDHGNCKTEGWADQIVLQWDRLIVEALKPSSVPEPRKTAQYFYQNRALVEASRICALADTHMKSSGKLQFYKEKALDCRGPLLKHEASSNQESKKSKKRTFEESEQEQNNSSQASKQKYMCLAVEDWDLLNSY