Sequence details NCBI ID: XM_004874533.1 (Coding sequence)   Best Hit

Details from NCBI annotation

Gene Symbol Lrrc18
Gene Name leucine rich repeat containing 18
Entrez Gene ID 101714199

Database interlinks

Part of NW_004624928.1 (Scaffold)

For more information consult the page for NW_004624928.1 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible homologs of the naked mole-rat gene and compared to it.

LRRC18 ENSCPOG00000021217 (Guinea pig)

Gene Details

leucine rich repeat containing 18

External Links

Gene Match (Ensembl Protein ID: ENSCPOP00000020136, Guinea pig)

Protein Percentage 88.24%
CDS Percentage 88.1%
Ka/Ks Ratio 0.11004 (Ka = 0.0609, Ks = 0.5533)

LRRC18 ENSG00000165383 (Human)

Gene Details

leucine rich repeat containing 18

External Links

Gene Match (Ensembl Protein ID: ENSP00000363275, Human)

Protein Percentage 79.61%
CDS Percentage 83.01%
Ka/Ks Ratio 0.15773 (Ka = 0.1143, Ks = 0.7249)

Lrrc18 ENSMUSG00000041673 (Mouse)

Gene Details

leucine rich repeat containing 18

External Links

Gene Match (Ensembl Protein ID: ENSMUSP00000041199, Mouse)

Protein Percentage 82.75%
CDS Percentage 81.7%
Ka/Ks Ratio 0.07637 (Ka = 0.0877, Ks = 1.1484)

Lrrc18 ENSRNOG00000020080 (Rat)

Gene Details

leucine rich repeat containing 18 (Lrrc18), mRNA

External Links

Gene Match (Ensembl Protein ID: ENSRNOP00000027204, Rat)

Protein Percentage 80.78%
CDS Percentage 80.65%
Ka/Ks Ratio 0.0921 (Ka = 0.1043, Ks = 1.1327)

Genome Location

Sequence Coding sequence

Length: 768 bp    Location: 983799..999876   Strand: +
Raw sequence   
>XM_004874533.1
ATGGCCAAGGGTAGGAAGGGCCCCAAGGGCAAGAAGATCACCCTCAATGTAGCCAAGAATTGCATTAAAATCACCTTTGATGGGAAAAAACGCCTGGACCTGAGCAAGATGGGAATCACCACCTTCCCCAAGTGTATTCTTCGCCTCAGTGATGTGGATGAGCTGGACCTCAGCCGAAATCTGATCAGGAAAATCCCTGACTCCATTGCCAGGTTCCAGAACCTGCAGTGGCTGGACCTGCACAGCAACTACATCGACCGGCTGCCCACGTCCCTTGGCCAGATGACCACCCTTCTCTACCTCAATGTCAGCAACAACCGGCTGACCACCAAAGGGCTGCCCATGGAACTGAACCAGCTCAAGAACATCCGCACCATGAACCTAGGACTGAACTACCTAGACAGTGTGCCCACCACACTCGGGGCCCTGAAGGAGCTGCATGAGGTAGGGCTCCATGACAACCTACTCAATGACATCCCCACAAGCATTGTCCAGCTCCCCAAGCTGAAGAAGCTCAACACAAAGCGAAACCCCTTTCCAAAGGCGGAGGATGCAGACACCTTTGTGGACTCTATCAAAAGGCTGGAGAACCTCCATCTGGTGGAGGAGAAGGACCTGTGCAGGCCTTGCCTGAGAAGATGCCAACTGGCCCGGGAGAAGCTGAACCGAATAAAGAGCACAGTCACAGCAACACCAAGAAAGGCGCTGTTTTCTACTTTGATCTCCCCTAACTCTACAGCCAAGGAATCCCAGGAAGAGTGGAGGTGA

Related Sequences

XP_004874590.1 Protein

Lrrc18 PREDICTED: leucine-rich repeat-containing protein 18 [Heterocephalus glaber]

Length: 255 aa      View alignments
>XP_004874590.1
MAKGRKGPKGKKITLNVAKNCIKITFDGKKRLDLSKMGITTFPKCILRLSDVDELDLSRNLIRKIPDSIARFQNLQWLDLHSNYIDRLPTSLGQMTTLLYLNVSNNRLTTKGLPMELNQLKNIRTMNLGLNYLDSVPTTLGALKELHEVGLHDNLLNDIPTSIVQLPKLKKLNTKRNPFPKAEDADTFVDSIKRLENLHLVEEKDLCRPCLRRCQLAREKLNRIKSTVTATPRKALFSTLISPNSTAKESQEEWR