Details from NCBI annotation

Gene Symbol unclassified transcription discrepancy
Gene Name mRNA
Entrez Gene ID 101710606

Database interlinks

Part of NW_004624926.1 (Scaffold)

For more information consult the page for NW_004624926.1 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible homologs of the naked mole-rat gene and compared to it.

BEST1 ENSCPOG00000006105 (Guinea pig)

Gene Details

bestrophin 1

External Links

Gene Match (Ensembl Protein ID: ENSCPOP00000005506, Guinea pig)

Protein Percentage 74.56%
CDS Percentage 80.82%
Ka/Ks Ratio 0.19232 (Ka = 0.1561, Ks = 0.8116)

BEST1 ENSG00000167995 (Human)

Gene Details

bestrophin 1

External Links

Gene Match (Ensembl Protein ID: ENSP00000399709, Human)

Protein Percentage 66.03%
CDS Percentage 74.89%
Ka/Ks Ratio 0.20449 (Ka = 0.2216, Ks = 1.0837)

Best1 ENSMUSG00000037418 (Mouse)

Gene Details

bestrophin 1

External Links

Gene Match (Ensembl Protein ID: ENSMUSP00000113053, Mouse)

Protein Percentage 59.63%
CDS Percentage 67.16%
Ka/Ks Ratio 0.16137 (Ka = 0.3139, Ks = 1.9453)

Best1 ENSRNOG00000020346 (Rat)

Gene Details

bestrophin 1 (Best1), mRNA

External Links

Gene Match (Ensembl Protein ID: ENSRNOP00000007320, Rat)

Protein Percentage 61.25%
CDS Percentage 68.76%
Ka/Ks Ratio 0.17274 (Ka = 0.3011, Ks = 1.7431)

Genome Location

Sequence Coding sequence

Length: 1773 bp    Location: 478214..471273   Strand: -
>XM_004874441.1
ATGACCATCACCTACACCAACCAGGTGGCCAACGTCCGCCTGGGCTCCTTCTGCCGCCTGCTGCTCTGCTGGCAAGGCAGCATCTACAAGCTGCTGTACGGAGAGTTCCTCATCTTCCAGCTGTGCTACTACGTCATCCGCTACATCTACAGGCGGGCGCTCAGCGAGCGGCACCAGGAGGTGTTTGAGAAGCTGAGCATGTACTGCGACAGCTACATCCAGCTCATCCCCGTGTCCTTCGTGCTGGGGTTCTACGTGACGCTAGTCCTGACGCGCTGGTGGAACCAGTACGAAAACCTGCCGTGGCCCGACCGCCTCATGAACCAGGTGTCGGCCTTCGTGGAGGGCCGCGACGAGCTCGGCCGGCTGCTGCGGCGCACGTTCATGCGCTACTCCATCCTGGATTACGTCATCATCCTGCGCAGCGTCAGCGCCGCCATCTACAAGCGCTTCCCTAGCCTGCAGCACCTGCTGCAAGCAGGCTTCATGAGCCCCGCGGAGTACAAGAGGCTGGAGCAGCTGAGCCTCCCCCACAACATGTTCTGGGTCCCCTGGGTGTGGTTCGCCAACCTGGCCATGCAGGCCTGGCACAGAGGCCGGATTCGCGACTCGGTGCTGCTGCAGAGCCTGCTGAATGAGATGAACATCCTGAGCACCCAGTGTGGACTCCTGTATGGCTCCGACTGGATCAATATCCCGCTGGTGTACACACAGGTGGTGACCATGGCAGTGTACAGCTTCTTCCTGGCCTGCCTTTTGGGCCGGCAGTTTCTGATCCCGGCCAAGGCCTACCCAGGCCACGAGATGGACCTGGTTGTGCCCATCTTCACGTTCCTGCAGTTCTTCTTCTACATGGGCTGGCTGAAGGTGGCAGAGCAGCTCATCAACCCCTTTGGAGAGGATGACGATGACTTCGAGATCAACTGGATCCTGGACAGGAACTTGCAGGTGTCCCTGCTGTCGGTGGACGAGATGCACCAGGACCTGCCCCCCCTGGAGTGGGACATGTACTGGAACGAGATGGAGCCTCAGCCCCCTATGGCCGCAGCCAAGCAGTCCCACTGCTGCACCTCCTTCCTGGGCTCCACCTTCAACACCAGCCTGCAACAGGAAGACATGGAGTTTCAGCCAATCGAGGAGGAGGATGAGACCCACCAGGAAGTCATAGGCCGCTTCCTCGGGCAGCAGCTCCACCAGCACCACCCTTCCAGGAAGTTGCTGCCCTCCAGGAAGAAACCCTTCTGCCACCACAGCCGGTCCAGGGGTGCCCAGCAGCACCCCGGGGCCCAGGATGGCAAGCTCCAGCCTCCTCCAGATGCCTTCAAGGTGGCCGCCCTGTACGAGAGCATTGGGTACTACAGCCCCCCCCCCCCCGCAAGCCCCTCAGCCACTCCGCCAGTCTTCTCCGAACTGTTCGAACCCCCCAGCTGCCGAGACACAGCGGGCAGAGTTGCCAGAGACCAGAGCCTAAAGCCTTCGGTGGCGTCTGGGGCCAACATTTCCGAGTGGCTCCCCGCACGCGACCAGGCCTCAGAGGAGCACCCAGAGGTCTGTCCTGCCAAGAAAAGCATGGAGTTCAACCTGATGCCTGTGCCCAAGCCCCCCCAAGATCGCCTCCCAGAGCCACATTTAGAACAGTCGCCGAGTGGCCCACACCCTGCGCCCGGAGAGCACGTGGACCCCTACTGGGCCTTGGAAAACAGGTCTGTCTCCGGCCTGGGTCTCTTTAGGGCCCTGTGCGACACTCTCCCCCGCCTGGCTCCACTGCACTGA

Related Sequences

XP_004874498.1 Protein

unclassified transcription discrepancy PREDICTED: LOW QUALITY PROTEIN: bestrophin-1 [Heterocephalus glaber]

Length: 590 aa      View alignments
>XP_004874498.1
MTITYTNQVANVRLGSFCRLLLCWQGSIYKLLYGEFLIFQLCYYVIRYIYRRALSERHQEVFEKLSMYCDSYIQLIPVSFVLGFYVTLVLTRWWNQYENLPWPDRLMNQVSAFVEGRDELGRLLRRTFMRYSILDYVIILRSVSAAIYKRFPSLQHLLQAGFMSPAEYKRLEQLSLPHNMFWVPWVWFANLAMQAWHRGRIRDSVLLQSLLNEMNILSTQCGLLYGSDWINIPLVYTQVVTMAVYSFFLACLLGRQFLIPAKAYPGHEMDLVVPIFTFLQFFFYMGWLKVAEQLINPFGEDDDDFEINWILDRNLQVSLLSVDEMHQDLPPLEWDMYWNEMEPQPPMAAAKQSHCCTSFLGSTFNTSLQQEDMEFQPIEEEDETHQEVIGRFLGQQLHQHHPSRKLLPSRKKPFCHHSRSRGAQQHPGAQDGKLQPPPDAFKVAALYESIGYYSPPPPASPSATPPVFSELFEPPSCRDTAGRVARDQSLKPSVASGANISEWLPARDQASEEHPEVCPAKKSMEFNLMPVPKPPQDRLPEPHLEQSPSGPHPAPGEHVDPYWALENRSVSGLGLFRALCDTLPRLAPLH