Details from NCBI annotation
| Gene Symbol |
unclassified transcription discrepancy |
|
Gene Name
|
mRNA |
| Entrez Gene ID |
101710606
|
Database interlinks
Part of NW_004624926.1 (SequenceType object (1))
Potential Gene Matches
The following genes have been identified as possible homologs of the naked mole-rat gene and compared to it.
Gene Details
bestrophin 1
External Links
Gene Match(Ensembl Protein ID:ENSCPOP00000005506, Guinea pig)
| Protein Percentage |
74.56% |
| CDS Percentage |
80.82% |
| Ka/Ks Ratio |
0.19232 (Ka = 0.1561, Ks = 0.8116) |
Gene Details
bestrophin 1
External Links
Gene Match(Ensembl Protein ID:ENSP00000399709, Human)
| Protein Percentage |
66.03% |
| CDS Percentage |
74.89% |
| Ka/Ks Ratio |
0.20449 (Ka = 0.2216, Ks = 1.0837) |
Gene Details
bestrophin 1
External Links
Gene Match(Ensembl Protein ID:ENSMUSP00000113053, Mouse)
| Protein Percentage |
59.63% |
| CDS Percentage |
67.16% |
| Ka/Ks Ratio |
0.16137 (Ka = 0.3139, Ks = 1.9453) |
Gene Details
bestrophin 1 (Best1), mRNA
External Links
| Protein Percentage |
61.25% |
| CDS Percentage |
68.76% |
| Ka/Ks Ratio |
0.17274 (Ka = 0.3011, Ks = 1.7431) |
Sequence SequenceType object (2)
Length: 1773
bp
Location: 478214..471273
Strand: -
>XM_004874441.1
ATGACCATCACCTACACCAACCAGGTGGCCAACGTCCGCCTGGGCTCCTTCTGCCGCCTGCTGCTCTGCTGGCAAGGCAGCATCTACAAGCTGCTGTACGGAGAGTTCCTCATCTTCCAGCTGTGCTACTACGTCATCCGCTACATCTACAGGCGGGCGCTCAGCGAGCGGCACCAGGAGGTGTTTGAGAAGCTGAGCATGTACTGCGACAGCTACATCCAGCTCATCCCCGTGTCCTTCGTGCTGGGGTTCTACGTGACGCTAGTCCTGACGCGCTGGTGGAACCAGTACGAAAACCTGCCGTGGCCCGACCGCCTCATGAACCAGGTGTCGGCCTTCGTGGAGGGCCGCGACGAGCTCGGCCGGCTGCTGCGGCGCACGTTCATGCGCTACTCCATCCTGGATTACGTCATCATCCTGCGCAGCGTCAGCGCCGCCATCTACAAGCGCTTCCCTAGCCTGCAGCACCTGCTGCAAGCAGGCTTCATGAGCCCCGCGGAGTACAAGAGGCTGGAGCAGCTGAGCCTCCCCCACAACATGTTCTGGGTCCCCTGGGTGTGGTTCGCCAACCTGGCCATGCAGGCCTGGCACAGAGGCCGGATTCGCGACTCGGTGCTGCTGCAGAGCCTGCTGAATGAGATGAACATCCTGAGCACCCAGTGTGGACTCCTGTATGGCTCCGACTGGATCAATATCCCGCTGGTGTACACACAGGTGGTGACCATGGCAGTGTACAGCTTCTTCCTGGCCTGCCTTTTGGGCCGGCAGTTTCTGATCCCGGCCAAGGCCTACCCAGGCCACGAGATGGACCTGGTTGTGCCCATCTTCACGTTCCTGCAGTTCTTCTTCTACATGGGCTGGCTGAAGGTGGCAGAGCAGCTCATCAACCCCTTTGGAGAGGATGACGATGACTTCGAGATCAACTGGATCCTGGACAGGAACTTGCAGGTGTCCCTGCTGTCGGTGGACGAGATGCACCAGGACCTGCCCCCCCTGGAGTGGGACATGTACTGGAACGAGATGGAGCCTCAGCCCCCTATGGCCGCAGCCAAGCAGTCCCACTGCTGCACCTCCTTCCTGGGCTCCACCTTCAACACCAGCCTGCAACAGGAAGACATGGAGTTTCAGCCAATCGAGGAGGAGGATGAGACCCACCAGGAAGTCATAGGCCGCTTCCTCGGGCAGCAGCTCCACCAGCACCACCCTTCCAGGAAGTTGCTGCCCTCCAGGAAGAAACCCTTCTGCCACCACAGCCGGTCCAGGGGTGCCCAGCAGCACCCCGGGGCCCAGGATGGCAAGCTCCAGCCTCCTCCAGATGCCTTCAAGGTGGCCGCCCTGTACGAGAGCATTGGGTACTACAGCCCCCCCCCCCCCGCAAGCCCCTCAGCCACTCCGCCAGTCTTCTCCGAACTGTTCGAACCCCCCAGCTGCCGAGACACAGCGGGCAGAGTTGCCAGAGACCAGAGCCTAAAGCCTTCGGTGGCGTCTGGGGCCAACATTTCCGAGTGGCTCCCCGCACGCGACCAGGCCTCAGAGGAGCACCCAGAGGTCTGTCCTGCCAAGAAAAGCATGGAGTTCAACCTGATGCCTGTGCCCAAGCCCCCCCAAGATCGCCTCCCAGAGCCACATTTAGAACAGTCGCCGAGTGGCCCACACCCTGCGCCCGGAGAGCACGTGGACCCCTACTGGGCCTTGGAAAACAGGTCTGTCTCCGGCCTGGGTCTCTTTAGGGCCCTGTGCGACACTCTCCCCCGCCTGGCTCCACTGCACTGA
Related Sequences
unclassified transcription discrepancy PREDICTED: LOW QUALITY PROTEIN: bestrophin-1 [Heterocephalus glaber]
Length: 590
aa
View alignments>XP_004874498.1
MTITYTNQVANVRLGSFCRLLLCWQGSIYKLLYGEFLIFQLCYYVIRYIYRRALSERHQEVFEKLSMYCDSYIQLIPVSFVLGFYVTLVLTRWWNQYENLPWPDRLMNQVSAFVEGRDELGRLLRRTFMRYSILDYVIILRSVSAAIYKRFPSLQHLLQAGFMSPAEYKRLEQLSLPHNMFWVPWVWFANLAMQAWHRGRIRDSVLLQSLLNEMNILSTQCGLLYGSDWINIPLVYTQVVTMAVYSFFLACLLGRQFLIPAKAYPGHEMDLVVPIFTFLQFFFYMGWLKVAEQLINPFGEDDDDFEINWILDRNLQVSLLSVDEMHQDLPPLEWDMYWNEMEPQPPMAAAKQSHCCTSFLGSTFNTSLQQEDMEFQPIEEEDETHQEVIGRFLGQQLHQHHPSRKLLPSRKKPFCHHSRSRGAQQHPGAQDGKLQPPPDAFKVAALYESIGYYSPPPPASPSATPPVFSELFEPPSCRDTAGRVARDQSLKPSVASGANISEWLPARDQASEEHPEVCPAKKSMEFNLMPVPKPPQDRLPEPHLEQSPSGPHPAPGEHVDPYWALENRSVSGLGLFRALCDTLPRLAPLH