Details from NCBI annotation

Gene Symbol Prpf19
Gene Name pre-mRNA processing factor 19, transcript variant X3
Entrez Gene ID 101719630

Database interlinks

Part of NW_004624926.1 (Scaffold)

For more information consult the page for NW_004624926.1 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible homologs of the naked mole-rat gene and compared to it.

PRPF19 ENSCPOG00000020688 (Guinea pig)

Gene Details

pre-mRNA processing factor 19

External Links

Gene Match (Ensembl Protein ID: ENSCPOP00000020974, Guinea pig)

Protein Percentage 99.6%
CDS Percentage 92.13%
Ka/Ks Ratio 0.00236 (Ka = 0.0017, Ks = 0.6997)

PRPF19 ENSG00000110107 (Human)

Gene Details

pre-mRNA processing factor 19

External Links

Gene Match (Ensembl Protein ID: ENSP00000227524, Human)

Protein Percentage 99.01%
CDS Percentage 88.76%
Ka/Ks Ratio 0.00453 (Ka = 0.0044, Ks = 0.963)

Prpf19 ENSMUSG00000024735 (Mouse)

Gene Details

PRP19/PSO4 pre-mRNA processing factor 19 homolog (S. cerevisiae)

External Links

Gene Match (Ensembl Protein ID: ENSMUSP00000025642, Mouse)

Protein Percentage 99.21%
CDS Percentage 87.04%
Ka/Ks Ratio 0.00313 (Ka = 0.0035, Ks = 1.1182)

Prpf19 ENSRNOG00000020897 (Rat)

Gene Details

pre-mRNA processing factor 19 (Prpf19), mRNA

External Links

Gene Match (Ensembl Protein ID: ENSRNOP00000028373, Rat)

Protein Percentage 99.21%
CDS Percentage 87.04%
Ka/Ks Ratio 0.00309 (Ka = 0.0035, Ks = 1.1261)

Genome Location

Sequence Coding sequence

Length: 1515 bp    Location: 274530..268947   Strand: -
>XM_004874270.1
ATGTCCCTGATCTGCTCCATCTCCAATGAGGTCCCAGAGCACCCGTGCGTGTCCCCCGTGTCCAATCACGTGTACGAGCGGCGGCTCATCGAGAAGTACATCGCGGAGAATGGGACCGACCCCATCAACAACCAGCCGCTCTCCGAGGAGCAGCTCATCGACATCAAAGTTGCTCACCCGATCCGGCCCAAGCCTCCCTCGGCCACCAGCATCCCAGCCATCCTGAAAGCCCTGCAGGACGAGTGGGATGCCGTCATGCTGCACAGCTTCACCCTGCGCCAGCAGCTGCAGACCACCCGCCAGGAGCTGTCGCATGCGCTGTACCAGCACGACGCCGCCTGCCGCGTCATTGCCCGGCTCACCAAGGAAGTCACTGCCGCCCGAGAAGCTCTGGCAACCCTGAAGCCGCAGGCTGGCCTCATCGTACCCCAGGCTGTGCCCAGCTCCCAGCCGAGTGTTGTGGGTGCAGGTGAGCCCATGGATCTGGGTGAGCTGGTGGGAATGACTCAGGAGATCATCCAGAAGCTGCAAGACAAGGCCACGGTGCTGACCACGGAGCGGAAGAAGAGAGGGAAGACAGTGCCGGAGGAGCTGGTGAAGCCGGAGGAGCTCAGCAAGTACCGGCAGGTGGCATCGCATGTGGGGCTGCACAGTGCCAGCATCCCTGGGATCCTCGCCCTGGACCTCTGCCCCTCCGACACCAACAAGATCCTCACTGGCGGGGCGGATAAGAACGTGGTCGTGTTTGATAAGAGCTCTGAGCAAATCCTGGCCACCCTCAAAGGCCACACCAAGAAGGTCACCAGTGTGGTGTTTCACCCTTCCCAGGAGCTCGTGTTCTCGGCCTCCCCGGACGCCACCATCCGGATCTGGTCGGTCCCCAGCACCTCCTGCGTCCAGGTGGTGCGGGCCCACGAGAGCGCCGTGACCGGCCTGAGCCTGCACGCCACGGGCGACTACCTCCTGAGCTCCTCCGACGACCAGTACTGGGCCTTCTCCGACATCCAGACGGGCCGCGTGCTCACCAAGGTGACGGACGAGACCTCCGGCTGCTCCCTCACCTGCGCGCAGTTCCACCCCGACGGCCTCATCTTCGGAACGGGGACCATGGACTCTCAGATCAAGATCTGGGACCTGAAGGAGCGCACCAATGTGGCCAACTTCCCCGGCCACTCGGGCCCCATCACCAGCATCGCCTTCTCCGAGAACGGCTACTACCTGGCCACGGCGGCTGACGACTCCTCCGTGAAGCTGTGGGACCTGCGCAAGCTGAAGAACTTCAAGACGCTGCAGCTGGACAACAACTTCGAGGTGAAGTCCCTGATCTTCGACCAGAGTGGCACCTACCTGGCTCTCGGAGGCACAGACGTGCAGATCTATATCTGCAAGCAGTGGACGGAGATCCTGCACTTCACAGAGCACAGCGGCCTGACCACGGGGGTGGCCTTTGGGCACCACGCCAAGTTCCTGGCGTCCACAGGCATGGACAGGAGCCTCAAGTTCTACAGCCTGTAG

Related Sequences

XP_004874327.1 Protein

Prpf19 PREDICTED: pre-mRNA-processing factor 19 isoform X3 [Heterocephalus glaber]

Length: 504 aa      View alignments
>XP_004874327.1
MSLICSISNEVPEHPCVSPVSNHVYERRLIEKYIAENGTDPINNQPLSEEQLIDIKVAHPIRPKPPSATSIPAILKALQDEWDAVMLHSFTLRQQLQTTRQELSHALYQHDAACRVIARLTKEVTAAREALATLKPQAGLIVPQAVPSSQPSVVGAGEPMDLGELVGMTQEIIQKLQDKATVLTTERKKRGKTVPEELVKPEELSKYRQVASHVGLHSASIPGILALDLCPSDTNKILTGGADKNVVVFDKSSEQILATLKGHTKKVTSVVFHPSQELVFSASPDATIRIWSVPSTSCVQVVRAHESAVTGLSLHATGDYLLSSSDDQYWAFSDIQTGRVLTKVTDETSGCSLTCAQFHPDGLIFGTGTMDSQIKIWDLKERTNVANFPGHSGPITSIAFSENGYYLATAADDSSVKLWDLRKLKNFKTLQLDNNFEVKSLIFDQSGTYLALGGTDVQIYICKQWTEILHFTEHSGLTTGVAFGHHAKFLASTGMDRSLKFYSL