Sequence details NCBI ID: XM_004874053.1 (Coding sequence)   Best Hit

Details from NCBI annotation

Gene Symbol Trpc4
Gene Name transient receptor potential cation channel, subfamily C, member 4
Entrez Gene ID 101712632

Database interlinks

Part of NW_004624920.1 (Scaffold)

For more information consult the page for NW_004624920.1 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible homologs of the naked mole-rat gene and compared to it.

TRPC4ALPHA ENSCPOG00000011742 (Guinea pig)

Gene Details

Uncharacterized protein

External Links

Gene Match (Ensembl Protein ID: ENSCPOP00000010558, Guinea pig)

Protein Percentage 97.7%
CDS Percentage 93.6%
Ka/Ks Ratio 0.04854 (Ka = 0.0115, Ks = 0.2359)

TRPC4 ENSG00000133107 (Human)

Gene Details

transient receptor potential cation channel, subfamily C, member 4

External Links

Gene Match (Ensembl Protein ID: ENSP00000369003, Human)

Protein Percentage 98.16%
CDS Percentage 92.43%
Ka/Ks Ratio 0.02625 (Ka = 0.0085, Ks = 0.3254)

Trpc4 ENSMUSG00000027748 (Mouse)

Gene Details

transient receptor potential cation channel, subfamily C, member 4

External Links

Gene Match (Ensembl Protein ID: ENSMUSP00000029311, Mouse)

Protein Percentage 96.81%
CDS Percentage 88.18%
Ka/Ks Ratio 0.02798 (Ka = 0.0163, Ks = 0.5829)

Trpc4 ENSRNOG00000011133 (Rat)

Gene Details

transient receptor potential cation channel, subfamily C, member 4 (Trpc4), transcript variant beta, mRNA

External Links

Gene Match (Ensembl Protein ID: ENSRNOP00000042886, Rat)

Protein Percentage 96.72%
CDS Percentage 87.88%
Ka/Ks Ratio 0.02608 (Ka = 0.0158, Ks = 0.6071)

Genome Location

Sequence Coding sequence

Length: 2934 bp    Location: 901623..642821   Strand: -
Raw sequence   
>XM_004874053.1
ATGGCTCAGTTCTATTACAAAAGAAATGTGAATGCCCCCTACAGAGACCGTATCCCTCTGAGGATTGTCCGAGCAGAATCAGAGCTCTCACCATCAGAAAAAGCCTACCTGAATGCGGTGGAAAAGGGAGACTATGCAAGTGTCAAGAAATCCCTAGAGGAAGCTGAAATTTATTTCAAGATCAATATTAATTGCATTGACCCTCTTGGAAGGACAGCCCTTCTGATTGCAATTGAAAATGAGAATTTGGAACTCATTGAACTGCTCTTAAGCTTCAATGTCTACGTTGGAGATGCTCTGTTGCATGCCATCAGGAAAGAGGTTGTCGGAGCTGTTGAGCTGCTACTGAACCACAAAAAGCCAAGTGGAGAAAAACAGGTACCTCCCATACTCCTTGATAAGCAGTTTTCTGAATTTACTCCCGATATCACCCCAATCATTTTGGCAGCCCATACAAACAATTACGAGATAATAAAACTTTTAGTCCAGAAAGGCGTCTCTGTGCCCCGACCCCACGAGGTCCGCTGTAACTGTGTGGAATGCGTCTCCAGCTCAGATGTGGACAGCCTCCGCCACTCGCGTTCCAGACTAAACATCTACAAGGCCCTGGCCAGTCCCTCGCTCATTGCACTGTCCAGCGAAGATCCTTTTCTCACAGCCTTTCAACTCAGTTGGGAGCTCCAGGAACTGAGCAAAGTGGAAAATGAATTCAAGTCAGAGTATGAGGAGCTGTCACGACAATGCAAGCAGTTTGCGAAGGACCTCCTGGATCAGACGAGGAGTTCCAGAGAACTGGAAATTATTCTTAATTACCGAGATGACAACAGTCTGCTTGAAGAGCAAAGTGGAAATGATCTTGCAAGACTAAAATTGGCCATTAAGTACCGTCAAAAAGAGTTTGTTGCCCAGCCCAACTGTCAGCAGCTGCTTGCATCTCGTTGGTATGATGAGTTCCCAGGTTGGAGGAGAAGACACTGGGCAGTGAAGATGGTGACATGTTTCATAATAGGACTTCTTTTTCCTGTTTTCTCTGTGTGCTACCTGATAGCTCCTAAAAGCCCACTTGGACTATTCATCAGAAAGCCATTTATCAAGTTTATCTGCCACACAGCCTCCTATTTGACTTTTTTGTTCTTGCTGCTGCTTGCCTCTCAGCACATCGACAGGTCAGACTTGAACAGGCAAGGTCCACCACCAACCATCGTCGAGTGGATGATATTACCATGGGTCCTGGGTTTTATATGGGGAGAAATTAAGCAGATGTGGGATGGCGGACTTCAGGATTACATCCATGATTGGTGGAATCTAATGGATTTTGTGATGAACTCTCTATATTTAGCAACAATCTCCTTGAAGATCGTTGCATTTGTAAAGTACAGTGCTCTTAATCCACGAGAATCATGGGACATGTGGCATCCCACTCTGGTAGCTGAGGCTTTATTTGCTATTGCAAACATCTTCAGTTCCCTGCGTCTGATATCACTATTTACTGCAAATTCCCACCTGGGACCTCTGCAAATATCTCTAGGAAGAATGCTTCTGGACATTTTGAAGTTTCTATTCATATACTGCCTTGTGTTGCTAGCATTTGCAAATGGTCTAAATCAATTGTACTTCTATTATGAAGAAACAAAAGGGTTAAGCTGCAAAGGCATACGATGTGAAAAGCAGAATAATGCATTTTCCACGTTATTTGAGACACTGCAGTCACTATTTTGGTCAATATTTGGACTCATCAATCTGTATGTGACTAACGTGAAAGCCCAGCATGAATTCACTGAATTTGTTGGTGCCACCATGTTTGGGACATACAATGTCATCTCTCTGGTTGTCCTACTCAACATGTTAATAGCTATGATGAACAATTCTTACCAACTAATTGCTGACCATGCAGATATAGAATGGAAATTTGCTCGAACAAAGCTCTGGATGAGTTACTTTGAAGAAGGAGGTACCCTCCCCACTCCCTTCAATGTCATTCCAAGCCCCAAGTCTCTCTGGTACCTGATCAAATGGATATGGACTCATCTGTGCAAGAAAAAGATGAGAAGAAAGCCAGAAAGTTTTGGAACAATAGGGAGGCGAGCTGCTGATAATCTGAGAAGACATCACCAATATCAAGAGGTAATGAGGAATCTGGTGAAGCGCTATGTGGCAGCCATGATTAGAGATGCTAAAACTGAAGAAGGCCTGACCGAAGAGAATTTTAAGGAACTAAAGCAAGACATTTCTAGCTTCCGCTTTGAAGTTCTGGGATTACTCAAAGGAAGCAAATTTTCTACCACACAATCTGCAAATGCCACCAAGGAGTCTTCGAATTCAGCAGACTCAGATGAAAAGAGTGATAACGAAGGTAATGGCAAGGACAAGAAAAGGCATTTCAGCCTTTTTGATTTAACCACTCTGATCCATCCGAGGTCAGCAGCCATTGCCTCTGAGAGACATAACATAAGCAATGGCTCCGCCCTGGTGGTGCAGGAGCCACCAAGGGAGAAGCAGAGAAAAGTGAATTTTGTAGCTGATATCAAAAACTTCGGGTTGTTTCATAGACGATCAAAACAAAACGCTGCTGAGCAAAACGCAAACCAAATCTTCTCTGTTTCAGAAGAAGTTGCTCGTCAAAAGGCTGCAGGACCACTTGAGAGAAATATTCAGCTGGAATCCCGAGGATTAGCTACACGGGGTGACCTGAGCATTCCTGGTCTCAGTGAACAGTGTGTTTTAGTAGACCATAGAGAAAGGAATACGGACACACTGGGTTTGCAGGTAGGCAAGAGAGTGTGTTCCTTCAAGTCAGAGAAGGTTGTGGTGGAGGACACTGTACCTATCATACCAAAGGAGAAACACGAGAAGGATGAGGACTCCAGTATAGACTATGATTTAAACCTCACAGACACAGTTGCCCATGAAGATTACGTGACAACCAGATTGTGA

Related Sequences

XP_004874110.1 Protein

Trpc4 PREDICTED: short transient receptor potential channel 4 [Heterocephalus glaber]

Length: 977 aa      View alignments
>XP_004874110.1
MAQFYYKRNVNAPYRDRIPLRIVRAESELSPSEKAYLNAVEKGDYASVKKSLEEAEIYFKININCIDPLGRTALLIAIENENLELIELLLSFNVYVGDALLHAIRKEVVGAVELLLNHKKPSGEKQVPPILLDKQFSEFTPDITPIILAAHTNNYEIIKLLVQKGVSVPRPHEVRCNCVECVSSSDVDSLRHSRSRLNIYKALASPSLIALSSEDPFLTAFQLSWELQELSKVENEFKSEYEELSRQCKQFAKDLLDQTRSSRELEIILNYRDDNSLLEEQSGNDLARLKLAIKYRQKEFVAQPNCQQLLASRWYDEFPGWRRRHWAVKMVTCFIIGLLFPVFSVCYLIAPKSPLGLFIRKPFIKFICHTASYLTFLFLLLLASQHIDRSDLNRQGPPPTIVEWMILPWVLGFIWGEIKQMWDGGLQDYIHDWWNLMDFVMNSLYLATISLKIVAFVKYSALNPRESWDMWHPTLVAEALFAIANIFSSLRLISLFTANSHLGPLQISLGRMLLDILKFLFIYCLVLLAFANGLNQLYFYYEETKGLSCKGIRCEKQNNAFSTLFETLQSLFWSIFGLINLYVTNVKAQHEFTEFVGATMFGTYNVISLVVLLNMLIAMMNNSYQLIADHADIEWKFARTKLWMSYFEEGGTLPTPFNVIPSPKSLWYLIKWIWTHLCKKKMRRKPESFGTIGRRAADNLRRHHQYQEVMRNLVKRYVAAMIRDAKTEEGLTEENFKELKQDISSFRFEVLGLLKGSKFSTTQSANATKESSNSADSDEKSDNEGNGKDKKRHFSLFDLTTLIHPRSAAIASERHNISNGSALVVQEPPREKQRKVNFVADIKNFGLFHRRSKQNAAEQNANQIFSVSEEVARQKAAGPLERNIQLESRGLATRGDLSIPGLSEQCVLVDHRERNTDTLGLQVGKRVCSFKSEKVVVEDTVPIIPKEKHEKDEDSSIDYDLNLTDTVAHEDYVTTRL