Sequence details NCBI ID: XM_004874006.1 (Coding sequence)   Best Hit

Details from NCBI annotation

Gene Symbol Pdzrn4
Gene Name PDZ domain containing ring finger 4, transcript variant X2
Entrez Gene ID 101719273

Database interlinks

Part of NW_004624917.1 (Scaffold)

For more information consult the page for NW_004624917.1 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible homologs of the naked mole-rat gene and compared to it.

PDZRN4 ENSCPOG00000000372 (Guinea pig)

Gene Details

PDZ domain containing ring finger 4

External Links

Gene Match (Ensembl Protein ID: ENSCPOP00000000325, Guinea pig)

Protein Percentage 92.31%
CDS Percentage 90.98%
Ka/Ks Ratio 0.10017 (Ka = 0.0365, Ks = 0.3648)

PDZRN4 ENSG00000165966 (Human)

Gene Details

PDZ domain containing ring finger 4

External Links

Gene Match (Ensembl Protein ID: ENSP00000384197, Human)

Protein Percentage 88.16%
CDS Percentage 85.54%
Ka/Ks Ratio 0.08873 (Ka = 0.0618, Ks = 0.6968)

Pdzrn4 ENSMUSG00000036218 (Mouse)

Gene Details

PDZ domain containing RING finger 4

External Links

Gene Match (Ensembl Protein ID: ENSMUSP00000133159, Mouse)

Protein Percentage 83.74%
CDS Percentage 81.38%
Ka/Ks Ratio 0.08673 (Ka = 0.0905, Ks = 1.0439)

Pdzrn4 ENSRNOG00000022844 (Rat)

Gene Details

PDZ domain containing RING finger 4 (Pdzrn4), mRNA

External Links

Gene Match (Ensembl Protein ID: ENSRNOP00000037998, Rat)

Protein Percentage 85.68%
CDS Percentage 83.48%
Ka/Ks Ratio 0.0843 (Ka = 0.0736, Ks = 0.8726)

Genome Location

Sequence Coding sequence

Length: 2334 bp    Location: 1086435..1239340   Strand: +
Raw sequence   
>XM_004874006.1
ATGGGCTGCAATTTGTGCACTTTTCAGAAAAGAGAGGAACACTACAAACTGCTGTATGAAGTTTCCCAGGTGAATGGGAAGGATCTCTCGAAGGCCACCCATGAAGAGGCAGTGGAAGCTTTTCGAAATGCCAAGGAGCCCATTGTGGTGCAAGTGTTAAGGCGAACGCCTCTCAGTAGACCTTCGTATGGGACAGTCCCGGAAGTGCAGCTCATGAATGCCAGCACACAGACAGACATCACATTTGAGCACATCATGGCCCTGGCCAAGCTCCGGCCACCCACCCCTCCGGTGCCAGACATCTGTCCATTTCTGCTCTCAGACAGCTGCCACTCTCTTCATCCGATGGAGCGTGAATTTTATGAGGACAATGAGTATCTCTCTAGCCTGCCTGCTGATGCAGACAGAACAGAGGACTTTGAATATGAGGAGGTTGAGTTGTGTCGGGTTAACAGTCAAGAGAAGTTGGGCCTCACAGTCTGCTACCGGACGGATGATGAAGAAGACACTGGCATTTACGTCAGCGAGGTGGATCCAAATAGCATTGCTGCCAAAGACGGCCGAATTCGAGAAGGGGATCGGATTCTGCAAATAAATGGGGAAGACGTCCACAATCGAGAGGAGGCTGTGGCGTTGCTGTCGAGTGAGGAGTGTAAGAGAATCGTGCTGCTTGTTGCAAGGCCAGAGATTCAGCTGGATGAAGGCTGGCTGGAAGATGAAAGGAATGAATTCTTAGAGGAGTTAAACTTGGAGATGTTGGAAGAACAGCATAATGAAGCAATGCAGCACACTGCCAATGAGGTGGAGCAGCCAAAAAAGCAAGAAGAAGAAGAAGGTACAACAGATACGGCAACATCCTCCTCCAACAACCATGAGAAGGACAGCGGGGTGGGGCGCACAGACGAAAGCTTGCCGAATGAGGAGAGCTCAGAGCAGGAGATCGCAGCCGAGGACCCCAGCGCCACATCTTTGAACAGCAAGAGAGAGCTGGGGCAGAGCCAGGACACCCTGGGAAGCCTGGAACTTCAGTGCAATGAGAGCTTCGTGTCTGGCGAATACATTGACTCAGACTGCACTGGCAACCAGGATGAGTGCGAACGATTCCGACAGCTCTTAGAGCTCAAATGCAAAATCCGAAACCAGGGAGGGTGTGATCTGTATTACGCCAGCAGCACAATCGAATGCAACCAAGGGGAGCAGGAGGGAGTAGAGCATGAGCTACAGCTGCTAAATGAAGAGCTAAGAAACATTGAGCTGGAGTGCCAGAACATCATGCAGGCCCACAGGCTCCAGAAAGTGACAGACCCATATGGGGACATCTGGGCTCTGCACGATGGGGGATTCCGAAATTATAACACCAGCCTAGACATGCAAAGAGGAAAACTAGACGACATTATGGAGCATCCAGAAAAGTCAGACAAGGACAGCTCTAGTGCTTACAACACAGCCGAAAGCTGCAGAAGTACTCCACTCACAGTGGACCGTTCCCCGGACAGTTCCCTTCCCAGAACGATCAACCTCACTAACAAGAAAAACCTGGGAAGCACCATGGCCCCCCGTCAGCCCTCCTCTGGACAGAGCAGCAAAGAGTCAATGTCCACCAGAGCCAAGGCCACCGAACAAGGCTGCAGCACAGAAAGCCAGGAGAAGCTTCTGGAAAGCAGCCAGCGTCTGGACCCCGAGAAGACAGGCAGCGAGCCCATCCCTTACCTCTCTCCCTACCACAGCTCCTCCTACAGGTGCGCCAACATCCCAACCCACGCCAGGCATTACCAGAGCTACATGCAATTAATCCAGCAGAAGTCGGCCGTGGAGTACGCGCAGAGCCAGCTCAGTCTGGTGAGTGTGTGCAAGGACCCTCAGAAGGGGTCCGAGCCCAAGATGGAATGGAAGGTGAAAATCCGGAGCGACGGGACCCGCTACATCACCAAGAGACCTGTGCGAGACCGGATCCTGAAGGAACGTGCCTTAAAGATCAAGGAGGAGCGCAGCGGCATGACCACCGACGACGACACCATGAGCGAGTTGAAGATGGGGCGCTACTGGAGCAGAGAGGAGCGCAAGCAGCACCTGGTGCGCGCCAAGGAGCAGCGCCGGCGGCGCGAGTTCATGCTGCGCAGCCGGCTGGAGTGCCTGCGGGAGGCACCGCAGAGCGCCGGCGAGGCCCGGAAGGAGCCTAGCATTCTGGAGCTGAGCCACAAAAAGATGATGAGGAGGAGAAACAGGAAAATCCTGGACAACTGGATGACGATCCAGGAACTGATGACTCACGGGGCCAAGTCTCCGGACGGCACTAGGGTGCACAGCGCCTTCCTGTCCGTCACCACGGTATGA

Related Sequences

XP_004874063.1 Protein

Pdzrn4 PREDICTED: PDZ domain-containing RING finger protein 4-like isoform X2 [Heterocephalus glaber]

Length: 777 aa      View alignments
>XP_004874063.1
MGCNLCTFQKREEHYKLLYEVSQVNGKDLSKATHEEAVEAFRNAKEPIVVQVLRRTPLSRPSYGTVPEVQLMNASTQTDITFEHIMALAKLRPPTPPVPDICPFLLSDSCHSLHPMEREFYEDNEYLSSLPADADRTEDFEYEEVELCRVNSQEKLGLTVCYRTDDEEDTGIYVSEVDPNSIAAKDGRIREGDRILQINGEDVHNREEAVALLSSEECKRIVLLVARPEIQLDEGWLEDERNEFLEELNLEMLEEQHNEAMQHTANEVEQPKKQEEEEGTTDTATSSSNNHEKDSGVGRTDESLPNEESSEQEIAAEDPSATSLNSKRELGQSQDTLGSLELQCNESFVSGEYIDSDCTGNQDECERFRQLLELKCKIRNQGGCDLYYASSTIECNQGEQEGVEHELQLLNEELRNIELECQNIMQAHRLQKVTDPYGDIWALHDGGFRNYNTSLDMQRGKLDDIMEHPEKSDKDSSSAYNTAESCRSTPLTVDRSPDSSLPRTINLTNKKNLGSTMAPRQPSSGQSSKESMSTRAKATEQGCSTESQEKLLESSQRLDPEKTGSEPIPYLSPYHSSSYRCANIPTHARHYQSYMQLIQQKSAVEYAQSQLSLVSVCKDPQKGSEPKMEWKVKIRSDGTRYITKRPVRDRILKERALKIKEERSGMTTDDDTMSELKMGRYWSREERKQHLVRAKEQRRRREFMLRSRLECLREAPQSAGEARKEPSILELSHKKMMRRRNRKILDNWMTIQELMTHGAKSPDGTRVHSAFLSVTTV