Details from NCBI annotation

Gene Symbol Ptx4
Gene Name pentraxin 4, long, transcript variant X1
Entrez Gene ID 101711692

Database interlinks

Part of NW_004624913.1 (Scaffold)

For more information consult the page for NW_004624913.1 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible homologs of the naked mole-rat gene and compared to it.

PTX4 ENSCPOG00000007357 (Guinea pig)

Gene Details

pentraxin 4, long

External Links

Gene Match (Ensembl Protein ID: ENSCPOP00000006634, Guinea pig)

Protein Percentage 79.29%
CDS Percentage 86.19%
Ka/Ks Ratio 0.48004 (Ka = 0.1236, Ks = 0.2575)

PTX4 ENSG00000251692 (Human)

Gene Details

pentraxin 4, long

External Links

Gene Match (Ensembl Protein ID: ENSP00000293922, Human)

Protein Percentage 64.73%
CDS Percentage 72.33%
Ka/Ks Ratio 0.29967 (Ka = 0.2571, Ks = 0.8578)

Ptx4 ENSMUSG00000044172 (Mouse)

Gene Details

pentraxin 4

External Links

Gene Match (Ensembl Protein ID: ENSMUSP00000055984, Mouse)

Protein Percentage 66.6%
CDS Percentage 73.93%
Ka/Ks Ratio 0.33836 (Ka = 0.2412, Ks = 0.713)

Ptx4 ENSRNOG00000016918 (Rat)

Gene Details

Protein Ptx4

External Links

Gene Match (Ensembl Protein ID: ENSRNOP00000022697, Rat)

Protein Percentage 64.69%
CDS Percentage 73.71%
Ka/Ks Ratio 0.40329 (Ka = 0.2605, Ks = 0.646)

Genome Location

Sequence Coding sequence

Length: 1449 bp    Location: 734986..740499   Strand: +
>XM_004873738.1
ATGGGTCGCCCTGGGAAGAGGACCCTACCGTTCCTCCTTGTTTTTGTGTTCATGTATCTATGTGGGGTTTCGTTGCAGGAAGCCCGCCCAATAGGACAAAGAAAACCATTTTTTGAGAGGCTCCGTAGACTGGAAGAGCAGTTTCAAAGATTCCAAGAGGTCACCCTGACACACTTGCAGGGCATTGCAAACAACTACAATGTGTCCTACAATGTTGATGCCCGGTTCCAGAGGCTGACAGAAGAGAGCCAGGCTGTGGCTCTGGCAGTCAACAGGTCAGAGGCTGCCACACGGGTGGACCTGACCCGCCTAAAGATTTGGATGAGGAAGACCAAACGTCAAGCCCGGAAAGTGGATGCAAGGCTTCAGGACCTGGACCTTGCCCTGAGCAGGCAGCAGGTTTGGAAGAGGGAGGAGCAGAAGGCACAGCAGGATGCTACCTCATGCCTGGCCCTGGATGTGTCTACTTTGCAAAATGCACTGGCCCAACTGGCACACCAGGTCCATAGCCAGAGCGCCAGGCTAGCTGCTCTTGAGGGACAGCTGCAGATGGCCAACCCTGGCATTGCAGCCCAGCGGGTGATCCTGGCCCCAAACCAGCCTGTGCAGCCAGGTGTGAGCTCCCCAAAGCTGCATCAGGAAAAGCAGGCACTGAGGCCTCCACCTGAACACAGAAATCTACCCCAAGATTTTGCTACTATTTTCCAGGGGACACAGAAGCCCCCCTCCTTAAGCATCCATTGGGCATCTTCTGCCGCCCCAAGGGACCCTCCTCAGCTGGTATGGCTTCCCCAGGGACCAGGAAAAATTTGCAACGCCGGCCCTGTGTTTGTTTTCCCGAATGCCTCCACTGGAAATGTGGTCTTTCTCAGCCCTGGCTTCCTCAAGGGCCTACGAGCCCTGTCCTTCTGCAGCTGGATCCGCCTGGCTTCTGGCCACCTGGGCACCCTCCTCTCCTATGCCACTGAAGAGAATGACAACAAGCTGGTGCTGCATGGCCGAGACTCTCTGGTCCCCGGCTCTATGCACTTTGTTATTGGAGACCCAGCCTTCAGGGAGCTGCCCCTGCAGCCGCTGCTGGACAGCCAGTGGCACCACATCTGTGTCAGCTGGACATCTATCCAAGGCAGGTACTGGCTCTATGTGGACCGAAGGCTAGTGGCCTCTGGCTCCCACTTCAGGGAGGATTATGAGATCCCTCCTGGGGGATCCCTTGTGCTAGGCCAGGAGCAAGACAGTGTTGGGGGTGGTTTTGACAGTGCTGAAGCTTTTGTGGGGAGCATGTCTGGCTTGGCTATCTGGGACCGGGTGCTGGTGCCTAGAGAAGTTGCAAACCTTGTCACCGGGAAAAAGCTCCCTACAGGTGCCATCCTGACTCTAGCCAATGCCACACTGGTAGGTGGATTTGTGCAGAGAATCAACTGCCTTTGCCTGGAGCACTGTCCATGA

Related Sequences

XP_004873795.1 Protein

Ptx4 PREDICTED: pentraxin-4 isoform X1 [Heterocephalus glaber]

Length: 482 aa      View alignments
>XP_004873795.1
MGRPGKRTLPFLLVFVFMYLCGVSLQEARPIGQRKPFFERLRRLEEQFQRFQEVTLTHLQGIANNYNVSYNVDARFQRLTEESQAVALAVNRSEAATRVDLTRLKIWMRKTKRQARKVDARLQDLDLALSRQQVWKREEQKAQQDATSCLALDVSTLQNALAQLAHQVHSQSARLAALEGQLQMANPGIAAQRVILAPNQPVQPGVSSPKLHQEKQALRPPPEHRNLPQDFATIFQGTQKPPSLSIHWASSAAPRDPPQLVWLPQGPGKICNAGPVFVFPNASTGNVVFLSPGFLKGLRALSFCSWIRLASGHLGTLLSYATEENDNKLVLHGRDSLVPGSMHFVIGDPAFRELPLQPLLDSQWHHICVSWTSIQGRYWLYVDRRLVASGSHFREDYEIPPGGSLVLGQEQDSVGGGFDSAEAFVGSMSGLAIWDRVLVPREVANLVTGKKLPTGAILTLANATLVGGFVQRINCLCLEHCP