Sequence details NCBI ID: XM_004873736.1 (Coding sequence)   Best Hit

Details from NCBI annotation

Gene Symbol Snrnp25
Gene Name small nuclear ribonucleoprotein 25kDa (U11/U12), transcript variant X2
Entrez Gene ID 101710350

Database interlinks

Part of NW_004624913.1 (Scaffold)

For more information consult the page for NW_004624913.1 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible homologs of the naked mole-rat gene and compared to it.

SNRNP25 ENSCPOG00000006282 (Guinea pig)

Gene Details

small nuclear ribonucleoprotein 25kDa (U11/U12)

External Links

Gene Match (Ensembl Protein ID: ENSCPOP00000005664, Guinea pig)

Protein Percentage 92.14%
CDS Percentage 91.19%
Ka/Ks Ratio 0.15174 (Ka = 0.0418, Ks = 0.2753)

SNRNP25 ENSG00000161981 (Human)

Gene Details

small nuclear ribonucleoprotein 25kDa (U11/U12)

External Links

Gene Match (Ensembl Protein ID: ENSP00000372482, Human)

Protein Percentage 97.2%
CDS Percentage 91.59%
Ka/Ks Ratio 0.03483 (Ka = 0.0137, Ks = 0.3942)

Snrnp25 ENSMUSG00000040767 (Mouse)

Gene Details

small nuclear ribonucleoprotein 25 (U11/U12)

External Links

Gene Match (Ensembl Protein ID: ENSMUSP00000046654, Mouse)

Protein Percentage 97.96%
CDS Percentage 89.12%
Ka/Ks Ratio 0.0132 (Ka = 0.0094, Ks = 0.7122)

Snrnp25 ENSRNOG00000020626 (Rat)

Gene Details

Protein Snrnp25; Similar to chromosome 16 open reading frame 33; minus-99 protein (Predicted), isoform CRA_b

External Links

Gene Match (Ensembl Protein ID: ENSRNOP00000027989, Rat)

Protein Percentage 97.96%
CDS Percentage 88.1%
Ka/Ks Ratio 0.01087 (Ka = 0.0095, Ks = 0.876)

Genome Location

Sequence Coding sequence

Length: 624 bp    Location: 934776..937790   Strand: +
Raw sequence   
>XM_004873736.1
ATGAATCCTACTCCTCCAACCCCTTCGCAGTCCGTGCGCTCCCAGCTGGCCTTGCGGCAGGCGGTCCCGTATTTCTCATTGGTCATTGCTGCCGCCCGCCCCTCGGCTCACCAATGGTTGGACTGTCTCACCCTGGCTGGCTCAGGGTGTGTGCGTGCTGCTCTGACCCAGCTCCCCCGCCCCAGCTGGATGGAATCAGCCGGGAAACCAGAGGCTCTGGAAGACTCGGAGGTCGCGTGTGGATCGGAGGTGCTGGAGGACGATGAAGATGAAGAGGAGACGCTGCCTCACTCCGAGGCCGTGGACGTGTTCCAGGAGGGTCTCGCCATGGTGGTGCAGGACCCGCTGCTTTGCGACCTACCGATCCAGGTTACTTTGGAAGAGGTGAACTCCCAGATAGCACTAGAATATGGCCAAGCAATGACAGTCCGAGTGTGCAAGATGGATGGAGAAGTAATGCCTGTGGTCGTAGTGCAGAACGCCACGGTCCTGGACCTGAAGAAGGCCATTCAGAGATATGTGCAACTCAAGCAGGAGCGTGAAGGGGGCATTCAGCACATCAGCTGTTACGGTATCCGGAATCGGGATGAGGTGTCCTTCATCAAAAAGCTGAGGCAAAAGTGA

Related Sequences

XP_004873793.1 Protein

Snrnp25 PREDICTED: U11/U12 small nuclear ribonucleoprotein 25 kDa protein isoform X2 [Heterocephalus glaber]

Length: 207 aa      View alignments
>XP_004873793.1
MNPTPPTPSQSVRSQLALRQAVPYFSLVIAAARPSAHQWLDCLTLAGSGCVRAALTQLPRPSWMESAGKPEALEDSEVACGSEVLEDDEDEEETLPHSEAVDVFQEGLAMVVQDPLLCDLPIQVTLEEVNSQIALEYGQAMTVRVCKMDGEVMPVVVVQNATVLDLKKAIQRYVQLKQEREGGIQHISCYGIRNRDEVSFIKKLRQK