Sequence details NCBI ID: XM_004873637.1 (Coding sequence)   Best Hit

Details from NCBI annotation

Gene Symbol Caskin1
Gene Name CASK interacting protein 1, transcript variant X1
Entrez Gene ID 101712285

Database interlinks

Part of NW_004624913.1 (Scaffold)

For more information consult the page for NW_004624913.1 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible homologs of the naked mole-rat gene and compared to it.

CASKIN1 ENSCPOG00000011848 (Guinea pig)

Gene Details

CASK interacting protein 1

External Links

Gene Match (Ensembl Protein ID: ENSCPOP00000010658, Guinea pig)

Protein Percentage 95.52%
CDS Percentage 92.22%
Ka/Ks Ratio 0.101 (Ka = 0.0242, Ks = 0.2397)

CASKIN1 ENSG00000167971 (Human)

Gene Details

CASK interacting protein 1

External Links

Gene Match (Ensembl Protein ID: ENSP00000345436, Human)

Protein Percentage 91.19%
CDS Percentage 86.11%
Ka/Ks Ratio 0.06447 (Ka = 0.0457, Ks = 0.7088)

Caskin1 ENSMUSG00000033597 (Mouse)

Gene Details

CASK interacting protein 1

External Links

Gene Match (Ensembl Protein ID: ENSMUSP00000024958, Mouse)

Protein Percentage 90.81%
CDS Percentage 85.52%
Ka/Ks Ratio 0.08741 (Ka = 0.0506, Ks = 0.579)

Caskin1 ENSRNOG00000003195 (Rat)

Gene Details

CASK interacting protein 1 (Caskin1), mRNA

External Links

Gene Match (Ensembl Protein ID: ENSRNOP00000004486, Rat)

Protein Percentage 90.88%
CDS Percentage 85.69%
Ka/Ks Ratio 0.08767 (Ka = 0.05, Ks = 0.5707)

Genome Location

Sequence Coding sequence

Length: 4314 bp    Location: 62254..79343   Strand: +
Raw sequence   
>XM_004873637.1
ATGGGGAAGGAGCAGGAGCTCGTGCAGGCGGTGAAGGCGGAGGACGTGGGGACCGCGCAGAGGCTGCTGCAGAGGCCGAGGCCGGGGAAGGCCAAGCTCCTGGGCTCCACCAAGAAGATCAACGTCAACTTTCAGGACCCAGATGGCTTCTCAGCCCTGCACCATGCGGCCCTGAATGGCAACACAGAATTGATCTCTCTACTGCTGGAGGCTCAGGCTGCTGTGGACATCAAGGACAACAAAGGTATGCGGCCCTTGCACTATGCAGCCTGGCAGGGTCGGAAGGAGCCCATGAAGCTAGTGCTGAAGGCTGGCTCAGCAGTAAATGTCCCATCTGATGAGGGCCACATCCCCTTGCACCTGGCGGCCCAGCATGGTCATTACGATGTGTCTGAGATGCTGCTGCAGCACCAGTCTAACCCATGCATGGTGGACAACTCAGGGAAGACACCTCTGGACCTGGCCTGTGAGTTTGGCCGAGTTGGGGTGGTCCAGCTACTCCTGAGCAGCAATATGTGTGCGGCTTTGCTGGAGCCACGTCCGGGCGACACCACTGACCCCAATGGCACCAGCCCCCTACACCTGGCAGCCAAGAATGGCCACATTGACATCATCAGACTCCTCCTCCAAGCTGGCATCGACATTAACCGCCAGACTAAGTCTGGCACAGCCCTGCATGAGGCAGCACTCTGTGGGAAGACAGAAGTGGTTCGGCTATTGTTGGACAGTGGGATCAATGCCCAAGTGAGGAACACCTACAGCCAGACGGCGCTGGATATCGTACACCAGTTCACCACATCACAGGCCAGCAAAGAGATCAAGCAGCTGCTACGAGAGGCCTCAGCGGCCCTGCAGGTCCGGGCAACCAAGGATTATTGCAACAATTACGACCTGACGAGCCTCAACGTGAAGGCTGGGGACATCATCACAGTCCTGGAACAACATCCAGATGGCAGGTGGAAGGGCTGTATCCATGACAACCGGACAGGCAATGACCGGGTGGGCTACTTCCCATCCTCCTTGGGTGAGGCCATCATCAAAAGAGCAGGTTCCCGAGTAGGAAGTGAGCCAAGCCCATCCCAGGGAGGAAGCTCATCAGGGCCCTCTGGGCCCCCTGAGGAGATCTGGGTGCTGAGGAAGCCTTTTGCAGGTGGAGATCGCAGTGGCAGCTTGAGCAGTGTGGCTGGTGGCAGGAGTGGTGGGGGCCACACCCTACATGCAGGCTCTGAAGGGGTCAAGCTCCTGGCAACAGTGCTTTCCCAGAAGTCTGTCTCTGAATCCAGCCCAGGCGACAGCCCTGTCAAGCCTCCGGAGGGGACCACAGGTGCGGCCCGGTCCCAGCCTCCAGTAGCTCACACTGGACAAGGCTATGTGGAACAGCCTCCCAAGAAGCTGGAGCCAGCATCGGAGGGCAAGAGTGCTGAGGCAGTCAGCCAGTGGCTTGCCACATTCCAGCTGCAGCTCTATGCCCCCAACTTCACCAGTGCCGGCTATGACCTGCCCACCATCAGCCGTATGACCCCTGAGGACCTCACGGCTATAGGTGTCACCAAGCCAGGCCACCGAAAGAAGATCACGGCAGAGATCAGCGGCTTGAACATCCCTGACTGGCTACCCGAACACAAACCTGCTAACCTGGCCGTGTGGCTGTCCATGATCGGCCTGGCACAGTACTACAAGGTGCTGGTGGACAACGGCTATGAGAACATTGATTTCATCACAGACATCACCTGGGAAGACCTGCAGGAGATCGGCATCACTAAGCTGGGCCACCAAAAGAAGCTGATGCTGGCAGTGAGGAAGCTGGCAGAGCTCCAGAAAGCAGAATATGCCAAGTATGAGGGGGGACCCCTGCATCGAAAGGCACCCCAGTCACTCAAAATGATGGCTATTGAGTCCCCACCCCCACCTGAGCCTGCTCCAACTGACTGCCAATCTCCTAAGATGACCACCTTCCAGGACAGTGAGCTCAGTGGCGAGCTGCAGGCTGCCATGACTGGCCCGGCCGATGGGGGGACTGCTGAGAAGCCTTCCAACCACCTGCCGCCCACCCCAAAGGCCACCTCGCGGCAGGAGCCCAGCCTAGGTGGACGGGCTCGGCATATGAGTAGTTCTCAGGAGCTGCTAGGAGAAGGGCCCCCTGGGCCTGGCAGCCCCATGTCACGAAGCCAGGAATACCTACTGGATGAGGGGCAGGCCCCTGGTACCCTACCTAAGGAGGTCCGGTCTGGCCGCCATGGGCACCACATCAAGAGGGCTAGTGTGCCCCCAGTGCCTGGCAAGCCTCGGCAGGTCCTTCCACCAGGTGGCAGCCATTTCACACCCCCTCAGACGCCCACCAAAGCCCGGCCAGGCTCCCCCCAAGCCCTCACAGGACCTCATGGTCCAGCTCCCGTCACAGCCAAGGTGAAGCCCACCCCACAGCTGCTGCCACCAACAGAGCGACCCATGTCACCCCGTTCCCTGCCACAGTCACCTACACACCGTGGCTTTGCCTATGTGCTGCCCCAGCCTGTGGAGGGTGACACAGGGCCAGCCACACCAGCGCCTGTGCCCCAAACCATGCCTGCAGCTGTGCCCACACTGTGCCTGCCCCCTGAAGCTGAGGCAGAGCCTGGGCGGCCCAAGAAGCGTGCTCACAGCCTGAACCGCTATGCAGCATCTGACAGCGAGCCAGAGCGGGATGAGCTGCTGGTGCCTGCTGCTGCAGGACCCTATGCCACGGTCCAGCGCCGCGTGGGGCGCAGCCACTCTGTGAGGGCACCCACTGGCACTGATAAGAACGTAAACCGAAGTCAGTCCTTTGCTGTTCGGCCCCGCAAGAAGGGTCCCCCACCACCCCCACCCAAGCGATCCAGCTCGGCCATGGCCAGTGCCAACCTGGCCGATGAGCCAGCTCAGGATGCTGAAACTGACGAAGACCAGCTGGGGGTCAAGGCACAGCGTCGGCGGGCTAGTGACCTGGCTGGCAGTGTGGACACAGGCAGTGCCGGCAGTGTGAAGAGCATCGCGGCCATGCTTGAGCTGTCTTCCATTGGGGGTGGTGGTCGGGCTGCCCGTAGGCCTCCTGAGGGCCACCCCACACCTCATCCTGCCAGTCCAGGGCCAGGCCGGGTGGCCACAGTGTTAGCCTCAGTGAAGCACAAAGAGGCCATTGGGCCTGATGGTGAAGTAGTGAACCGGCGCCGCACACTCAGCGGCCCTGTTACTGGACTTCTGGCCACTGCCCGCCGGGGGTCTGTGGAGCCAACAGGTGGAGGCCACTTTGTGGAAGATGGTAAGGCCCGGCAGCAGCCTCAGGGTCCAGGCAAGGGAGAGGCAAGTGTTGATGGCCCACCCCTGGCCAGGGTAGAGGCCAGTGCCACACTGAAGAGGCGCATCCGGGCCAAGCAGAACCAGCAGGAGAATGTCAAATTCATCCTGACAGAGTCTGACACGGTCAAGCGTCGCCCTAAGGCCAAGGAGCGGGAGGCTGGTTCTGAACCCCTCCCATCACTGTCTGTGTATCAGAATGGCACAGCCACAGTTCGACGCCGCCCAGCCTTGGAGCAAGCTGGGCCCCCAGAGTTGCCTCCCCCACCCCCACCTGCTGAGCCCCCACCCACCGACCTGGCACACTTGCCCCCACTGCCCCTGCCAGAAGGTGATGCCCGAAAGCCAGCAAAGCCACCTGTCTCTCCTAAGCCTGTCCTGACTCAGCCTGTGCCCAAGATCCAGGGGTCACCCACGCCCTCCTCCAAGAAGGTGCCCCTGCCTGGTCCTGGCAGCCCAGAAGTGAAACGTGCACACGGTACGCCGCCTCCCGTGTCTCCCAAGCCGCCGCCGCCCCCCACGGCACCCAAACCGGCCAAGGCCGCGGCAGGCCTGCAGTCAGGTAGCGCCAGCTCGTCGCCTGCGCCCTCTCCAGCGCGCCAGCCGCCCCCTGCCCTTGCCAAGCCGGCCAGCACGCCACCCTCTCTGAGCGCTAGCCCTGCCAAGCCCCCGTCCCCGGGCGCGCCTGCGCTGCACGTGCCTGCCAAGCCCCCACGTGCCGCTGCTGCCGCCGCCGCTGCCACCGCCGCTGCCACCGCCGGCGCTACCGCTGCACTCGAGGGGACCTCGCCCTCGCCCGGGGATAGCGCGAGGCAGAAGCTGGAGGAGACCAGCGCATGTCTGGCCGCGGCGCTGCAAGCGGTGGAGGAGAAGATCCGGCAGGAGGATGGGCAAGGCCCCCGGCCCTCTGCGGTCGCAGAGAAGAGCACTGGCAGCATCCTAGATGACATCGGCAGCATGTTTGACGACCTGGCCGACCAGCTGGACGCCATGCTGGAGTGA

Related Sequences

XP_004873694.1 Protein

Caskin1 PREDICTED: caskin-1 isoform X1 [Heterocephalus glaber]

Length: 1437 aa      View alignments
>XP_004873694.1
MGKEQELVQAVKAEDVGTAQRLLQRPRPGKAKLLGSTKKINVNFQDPDGFSALHHAALNGNTELISLLLEAQAAVDIKDNKGMRPLHYAAWQGRKEPMKLVLKAGSAVNVPSDEGHIPLHLAAQHGHYDVSEMLLQHQSNPCMVDNSGKTPLDLACEFGRVGVVQLLLSSNMCAALLEPRPGDTTDPNGTSPLHLAAKNGHIDIIRLLLQAGIDINRQTKSGTALHEAALCGKTEVVRLLLDSGINAQVRNTYSQTALDIVHQFTTSQASKEIKQLLREASAALQVRATKDYCNNYDLTSLNVKAGDIITVLEQHPDGRWKGCIHDNRTGNDRVGYFPSSLGEAIIKRAGSRVGSEPSPSQGGSSSGPSGPPEEIWVLRKPFAGGDRSGSLSSVAGGRSGGGHTLHAGSEGVKLLATVLSQKSVSESSPGDSPVKPPEGTTGAARSQPPVAHTGQGYVEQPPKKLEPASEGKSAEAVSQWLATFQLQLYAPNFTSAGYDLPTISRMTPEDLTAIGVTKPGHRKKITAEISGLNIPDWLPEHKPANLAVWLSMIGLAQYYKVLVDNGYENIDFITDITWEDLQEIGITKLGHQKKLMLAVRKLAELQKAEYAKYEGGPLHRKAPQSLKMMAIESPPPPEPAPTDCQSPKMTTFQDSELSGELQAAMTGPADGGTAEKPSNHLPPTPKATSRQEPSLGGRARHMSSSQELLGEGPPGPGSPMSRSQEYLLDEGQAPGTLPKEVRSGRHGHHIKRASVPPVPGKPRQVLPPGGSHFTPPQTPTKARPGSPQALTGPHGPAPVTAKVKPTPQLLPPTERPMSPRSLPQSPTHRGFAYVLPQPVEGDTGPATPAPVPQTMPAAVPTLCLPPEAEAEPGRPKKRAHSLNRYAASDSEPERDELLVPAAAGPYATVQRRVGRSHSVRAPTGTDKNVNRSQSFAVRPRKKGPPPPPPKRSSSAMASANLADEPAQDAETDEDQLGVKAQRRRASDLAGSVDTGSAGSVKSIAAMLELSSIGGGGRAARRPPEGHPTPHPASPGPGRVATVLASVKHKEAIGPDGEVVNRRRTLSGPVTGLLATARRGSVEPTGGGHFVEDGKARQQPQGPGKGEASVDGPPLARVEASATLKRRIRAKQNQQENVKFILTESDTVKRRPKAKEREAGSEPLPSLSVYQNGTATVRRRPALEQAGPPELPPPPPPAEPPPTDLAHLPPLPLPEGDARKPAKPPVSPKPVLTQPVPKIQGSPTPSSKKVPLPGPGSPEVKRAHGTPPPVSPKPPPPPTAPKPAKAAAGLQSGSASSSPAPSPARQPPPALAKPASTPPSLSASPAKPPSPGAPALHVPAKPPRAAAAAAAATAAATAGATAALEGTSPSPGDSARQKLEETSACLAAALQAVEEKIRQEDGQGPRPSAVAEKSTGSILDDIGSMFDDLADQLDAMLE