Details from NCBI annotation

Gene Symbol Lsm4
Gene Name LSM4 homolog, U6 small nuclear RNA associated (S. cerevisiae), transcript variant X4
Entrez Gene ID 101720806

Database interlinks

Part of NW_004624908.1 (Scaffold)

For more information consult the page for NW_004624908.1 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible homologs of the naked mole-rat gene and compared to it.

LSM4 ENSCPOG00000024117 (Guinea pig)

Gene Details

LSM4 homolog, U6 small nuclear RNA associated (S. cerevisiae)

External Links

Gene Match (Ensembl Protein ID: ENSCPOP00000019796, Guinea pig)

Protein Percentage 95.68%
CDS Percentage 91.37%
Ka/Ks Ratio 0.02375 (Ka = 0.0201, Ks = 0.8476)

LSM4 ENSG00000130520 (Human)

Gene Details

LSM4 homolog, U6 small nuclear RNA associated (S. cerevisiae)

External Links

Gene Match (Ensembl Protein ID: ENSP00000469468, Human)

Protein Percentage 97.12%
CDS Percentage 89.93%
Ka/Ks Ratio 0.00976 (Ka = 0.0116, Ks = 1.1876)

Lsm4 ENSMUSG00000031848 (Mouse)

Gene Details

LSM4 homolog, U6 small nuclear RNA associated (S. cerevisiae)

External Links

Gene Match (Ensembl Protein ID: ENSMUSP00000034311, Mouse)

Protein Percentage 94.2%
CDS Percentage 86.23%
Ka/Ks Ratio 0.00991 (Ka = 0.0242, Ks = 2.446)

Lsm4 ENSRNOG00000019572 (Rat)

Gene Details

LSM4 homolog, U6 small nuclear RNA associated (S. cerevisiae) (Lsm4), mRNA

External Links

Gene Match (Ensembl Protein ID: ENSRNOP00000026567, Rat)

Protein Percentage 94.2%
CDS Percentage 84.78%
Ka/Ks Ratio 0.00359 (Ka = 0.0241, Ks = 6.7143)

Genome Location

Sequence Coding sequence

Length: 420 bp    Location: 1603042..1595877   Strand: -
>XM_004873345.1
ATGTTGCCCCTGTCACTGCTGAAGACTGCGCAGAACCACCCCATGTTGGTGGAGCTCAAGAACGGAGAGACGTACAACGGGCACCTGGTGAGCTGTGACAACTGGATGAACATCAACCTGCGTGAGGTCATCTGCACGTCCCGGGACGGGGACAAGTTCTGGCGCATGCCGGAGTGCTACATCCGCGGCAGCACCATCAAGTACCTGCGCATCCCCGACGAGATCATCGACATGGTCAAGGAGGAGGTGGTGGCCAAGGGCCGCGGGCGCGGCGGGCTGCAGCAGCAGAAGCAGCAGCGAGGCCGAGGCATGGGCAGCGCCGGGCGAGGTGTGTTTGGCGGCCGGGGCCGCGGCAGCATCACGGGCACGGGCCGGGGACAGCCCGAGAAAAAGCCAGGCAGACAGGCGGGCAAGCAGTGA

Related Sequences

XP_004873402.1 Protein

Lsm4 PREDICTED: U6 snRNA-associated Sm-like protein LSm4 isoform X4 [Heterocephalus glaber]

Length: 139 aa     
>XP_004873402.1
MLPLSLLKTAQNHPMLVELKNGETYNGHLVSCDNWMNINLREVICTSRDGDKFWRMPECYIRGSTIKYLRIPDEIIDMVKEEVVAKGRGRGGLQQQKQQRGRGMGSAGRGVFGGRGRGSITGTGRGQPEKKPGRQAGKQ