Details from NCBI annotation

Gene Symbol Ushbp1
Gene Name Usher syndrome 1C binding protein 1, transcript variant X4
Entrez Gene ID 101723727

Database interlinks

Part of NW_004624908.1 (Scaffold)

For more information consult the page for NW_004624908.1 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible homologs of the naked mole-rat gene and compared to it.

USHBP1 ENSCPOG00000006921 (Guinea pig)

Gene Details

Usher syndrome 1C binding protein 1

External Links

Gene Match (Ensembl Protein ID: ENSCPOP00000006242, Guinea pig)

Protein Percentage 66.82%
CDS Percentage 75.94%
Ka/Ks Ratio 0.31556 (Ka = 0.2303, Ks = 0.7298)

USHBP1 ENSG00000130307 (Human)

Gene Details

Usher syndrome 1C binding protein 1

External Links

Gene Match (Ensembl Protein ID: ENSP00000252597, Human)

Protein Percentage 65.15%
CDS Percentage 73.03%
Ka/Ks Ratio 0.26114 (Ka = 0.2528, Ks = 0.9682)

Ushbp1 ENSMUSG00000034911 (Mouse)

Gene Details

Usher syndrome 1C binding protein 1

External Links

Gene Match (Ensembl Protein ID: ENSMUSP00000045668, Mouse)

Protein Percentage 54.42%
CDS Percentage 65.48%
Ka/Ks Ratio 0.22306 (Ka = 0.381, Ks = 1.7082)

Ushbp1 ENSRNOG00000023485 (Rat)

Gene Details

Usher syndrome 1C binding protein 1 (Ushbp1), mRNA

External Links

Gene Match (Ensembl Protein ID: ENSRNOP00000042639, Rat)

Protein Percentage 55.97%
CDS Percentage 67.13%
Ka/Ks Ratio 0.19839 (Ka = 0.3466, Ks = 1.7471)

Genome Location

Sequence Coding sequence

Length: 1986 bp    Location: 661997..671318   Strand: +
>XM_004873251.1
ATGAGCGCCAGGGCCACTCGGCCCCGGAGCCGGCGTGGCAGGCACGCTCCGCCTGGTGAATTGGACCCTGTAGCCGAGAGTTCCGAGGAGGGCGAGGTGGCCAGCGGGAGCTCGGGGCCCGGCCCTGCACTGCCGGGGAGCTCAGGACCACAGCAGCTGGGGCCTGCAGCGGAGTCGGGCAGCCAGGGCCCTGGGAGCAGGGCCAGCAAAGAGGCCTCAGAGGATGTGGATGGATCACTGGCCCCCACCCCAGAAGGGGCCCAGCTGCTCGCAGGGGACACCATCCAGCACCCAGAGATGGCAGCCCCACAGGCCGGGGGCACTTTCTCCCCTGCGTGTGGGGCTCCTGATGTGTTCCAGACCCTCCAGAGTGCCCTGGCCTCCCTGGAGGCCGCAGCTGCTGCCTGGCGCCCACAGCTCCTGAGTGGCCCGGGGCCTGGGGAGGTGGCAGGCCGGGCAGAGGGAATGCCAGGGCCCTGGCAGGAGGTGGCCTACCTGGCTGAGAAGAATGCCTGGCTGCGGCTGGCCCTGGATACCCGGGAGGACACGCTGGCACACATGCGGGCAGAGAGCGACACGCTGAGACAGGAGGTCCAGGAGCTGCAGGATTCCCTGAGGAGGCTGGAGTCCACCCCGGCTCCCTCCCGCAGCCACGCTAGCGGCCCAGGCAGCAACTGGAGCAGCTCTGCAGCGGCCAGGGAGTCTGGGGGGCCGCGGGGCCCCTCCCCGGCTCACCCCCTGCTCCGGCGCCTCCGCAGCCACCCCAGCGCCCACACCCTCGGGCCTCGAGTCCTGGAGGGGCAGGAGGAGCAGCTCCGGGGGAGCGTGGAGAAGCTCAAGGGCCTCAACCGCCTGCTGCTGGCTGCACTGCAGGGCGCCAAGGGCCGCTGCGAGGCGCTGAGCATGCGGCTGGGCTGCAGGGAGGCCGAGGCCACGGCGCTGCGCCTGGCGCTGCAGTACAGCGAGGACTGCGAGGCGGCCTACGGGGCCCTGCTCACCCTGCGGGAGGCCAGCGCCACAGCCCCCAGCGGTGACCTGCAGGCAGCCCAGGAGGAGGCGCGGAGGCTGCTGGCCCGCGACGGGGCCGCTTCGGGCGGAGGGGCAGCGCAGCCCAGCCCTGCGGGCAGCAGTGTGGACACACCCACTCCACAGGAAGTGGCCACCCAGCTCCTCGGCTACATCTGGCACCTCCAGGAGCACCGTGCCCTGCTGAAGTTTCCCCCGGAGCCTGGCCCCACCTTGGCACCCAGGCCCACCACGCCCCACTTGGACACCCTGGTGCAGGCCGTTCTGGAGGCCCAGCCTGGCACAGCCCTGCCCCGGCTGGAGAAGACAAAGATCCAGCAGGACCTGGTGGCCACACGGGAGACTCTGGCTGACCTGGTGCTGCAGCTGCAGCTGGCGCGGCGGGAGAAGCGGGCCCTGGAGCTACGGGAGGCGGCCCTGCGGGCCCAGGCGCCCGCGCTGCTGCTGCTGCTGGGTCAGCTGCGCTGGGAGCGGGCACAGCTCGGGCCCGAGGACAGCAGCAGCGGGGACAGCAGCGCGGGCGACAGCAGTGAGGACGAGGAGGCGTGGCCCCAGCAGGGCCTGGCCAGTGGCATGGATGGAGGCCCGGAGTGCAGAGCATGGGACCAGGAGAAGCTGGCCCAAGACCTGGCCTTGTCCCTCAGCCGCGCCCAGGGCCTGCAGGAGCAGCTGCGGTCCCTCCGGGCACAGCTGGAGCAGGTGGCCCAGCGAGGGCGTGCTGGGCGGGCCCAGAGTGCAGAGCTGAGCGCAGAGCTGTGCAGAGCTCACAGAGCCCTGGTCCTGGGCTTCCGAGGAGCCCACCGGAAGCAGGAAGAGCAGCGCTGGAAGGTGGAGAAGCAGATGGCACAGATGGAAGCCCGGCAGGCCGAGGAGCTGGCCAGGCTGGAGGCCACTGCCCGAGCCCTGGGGAAGCCCCGGACGTGCCCTCCGCTGCCCCTGCTGGGGGAGACCCTGCTGTAG

Related Sequences

XP_004873308.1 Protein

Ushbp1 PREDICTED: Usher syndrome type-1C protein-binding protein 1 isoform X4 [Heterocephalus glaber]

Length: 661 aa      View alignments
>XP_004873308.1
MSARATRPRSRRGRHAPPGELDPVAESSEEGEVASGSSGPGPALPGSSGPQQLGPAAESGSQGPGSRASKEASEDVDGSLAPTPEGAQLLAGDTIQHPEMAAPQAGGTFSPACGAPDVFQTLQSALASLEAAAAAWRPQLLSGPGPGEVAGRAEGMPGPWQEVAYLAEKNAWLRLALDTREDTLAHMRAESDTLRQEVQELQDSLRRLESTPAPSRSHASGPGSNWSSSAAARESGGPRGPSPAHPLLRRLRSHPSAHTLGPRVLEGQEEQLRGSVEKLKGLNRLLLAALQGAKGRCEALSMRLGCREAEATALRLALQYSEDCEAAYGALLTLREASATAPSGDLQAAQEEARRLLARDGAASGGGAAQPSPAGSSVDTPTPQEVATQLLGYIWHLQEHRALLKFPPEPGPTLAPRPTTPHLDTLVQAVLEAQPGTALPRLEKTKIQQDLVATRETLADLVLQLQLARREKRALELREAALRAQAPALLLLLGQLRWERAQLGPEDSSSGDSSAGDSSEDEEAWPQQGLASGMDGGPECRAWDQEKLAQDLALSLSRAQGLQEQLRSLRAQLEQVAQRGRAGRAQSAELSAELCRAHRALVLGFRGAHRKQEEQRWKVEKQMAQMEARQAEELARLEATARALGKPRTCPPLPLLGETLL