Sequence details NCBI ID: XM_004873246.1 (Coding sequence)   Best Hit

Details from NCBI annotation

Gene Symbol Use1
Gene Name unconventional SNARE in the ER 1 homolog (S. cerevisiae), transcript variant X5
Entrez Gene ID 101722095

Database interlinks

Part of NW_004624908.1 (Scaffold)

For more information consult the page for NW_004624908.1 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible homologs of the naked mole-rat gene and compared to it.

USE1 ENSCPOG00000024594 (Guinea pig)

Gene Details

unconventional SNARE in the ER 1 homolog (S. cerevisiae)

External Links

Gene Match (Ensembl Protein ID: ENSCPOP00000018452, Guinea pig)

Protein Percentage 93.39%
CDS Percentage 89.36%
Ka/Ks Ratio 0.03793 (Ka = 0.0322, Ks = 0.8484)

USE1 ENSG00000053501 (Human)

Gene Details

unconventional SNARE in the ER 1 homolog (S. cerevisiae)

External Links

Gene Match (Ensembl Protein ID: ENSP00000263897, Human)

Protein Percentage 85.21%
CDS Percentage 81.84%
Ka/Ks Ratio 0.04263 (Ka = 0.0776, Ks = 1.8209)

Use1 ENSMUSG00000002395 (Mouse)

Gene Details

unconventional SNARE in the ER 1 homolog (S. cerevisiae)

External Links

Gene Match (Ensembl Protein ID: ENSMUSP00000105680, Mouse)

Protein Percentage 80.07%
CDS Percentage 76.81%
Ka/Ks Ratio 0.0518 (Ka = 0.1219, Ks = 2.3532)

Use1 ENSRNOG00000016619 (Rat)

Gene Details

unconventional SNARE in the ER 1 homolog (S. cerevisiae) (Use1), mRNA

External Links

Gene Match (Ensembl Protein ID: ENSRNOP00000022650, Rat)

Protein Percentage 83.15%
CDS Percentage 79.9%
Ka/Ks Ratio 0.04075 (Ka = 0.09, Ks = 2.2088)

Genome Location

Sequence Coding sequence

Length: 840 bp    Location: 687249..683628   Strand: -
Raw sequence   
>XM_004873246.1
ATGAAGCCACTTCCGCCCTATCCCAAGATGGCGCCGACGGAAGGGGCAGGGTACGAGCCGCTAAGGATGGCTGCGTCAAGGCTGGAACTGAATCTGGTGAGGCTGCTGTGCCGCTGCGAAGCAATGGCAGCTGAGAAGCGGGACCCAGAAGAGTGGCGGCTGGAGAAGTACGTTGGGGCCCTGGAGGACATGCTGCAGGCGCTGAAGGCACAGGCGAGCCGGCCGGCCGCTGAGGTGCTGCACGAGTACGCGCGCAAGGTGGACTTCCTGCGGGGCCTGCTGCAGGCCGAGAAGCTGGCCTCCTCCTCTGAGAAGGCGCTGGCCAACCAGTTCCTGGCGCCCGGCCGCGTGCCCACCTCGGCCCGCGAGCGCGTGCCTGCTACCAAGACCCTGCACCTGCAGACCCGCGCGCGCTACGCCGGCGAGATGCGGCAGGAACTGCTGGGCACGGTAGAGCGCCAGCCTGAGGCGAGGAAGCGGAGTGGGTTGGCTGGACCCAGGCCCACAGATAAGAAGCAGTCAGCAGCCGAGCTAGACCTCGTCTTGCGGCGACAGCAGGACCTGCAGGAGAAGCTGGCAGAGGAGATGCTGGGCCTTGCCCGGAGCCTCAAGACCAATACACTGGCCGCTCAGAGTGTCATCAAGAAGGACAACCAGACCCTGTCCCACTCGCTCAAGATGGCTGACCAGAACCTGGAGAAGCTGAAGACGGAGTCGGAGCGGCTGGAGCAGCACACGCAGAAGTCAGTCAACTGGCTGCTGTGGGCCATGCTCATCGTGGTCTGCTTTCTCTTCATCAGCATGATCCTCTTCATCCGCATCGTGCCCAAGCTCAAGTAG

Related Sequences

XP_004873303.1 Protein

Use1 PREDICTED: vesicle transport protein USE1 isoform X5 [Heterocephalus glaber]

Length: 279 aa      View alignments
>XP_004873303.1
MKPLPPYPKMAPTEGAGYEPLRMAASRLELNLVRLLCRCEAMAAEKRDPEEWRLEKYVGALEDMLQALKAQASRPAAEVLHEYARKVDFLRGLLQAEKLASSSEKALANQFLAPGRVPTSARERVPATKTLHLQTRARYAGEMRQELLGTVERQPEARKRSGLAGPRPTDKKQSAAELDLVLRRQQDLQEKLAEEMLGLARSLKTNTLAAQSVIKKDNQTLSHSLKMADQNLEKLKTESERLEQHTQKSVNWLLWAMLIVVCFLFISMILFIRIVPKLK