Sequence details NCBI ID: XM_004873143.1 (Coding sequence)   Best Hit

Details from NCBI annotation

Gene Symbol Apoc1
Gene Name apolipoprotein C-I
Entrez Gene ID 101717774

Database interlinks

Part of NW_004624907.1 (Scaffold)

For more information consult the page for NW_004624907.1 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible homologs of the naked mole-rat gene and compared to it.

APOC1 ENSCPOG00000021989 (Guinea pig)

Gene Details

apolipoprotein C-I

External Links

Gene Match (Ensembl Protein ID: ENSCPOP00000020119, Guinea pig)

Protein Percentage 71.59%
CDS Percentage 83.71%
Ka/Ks Ratio 0.38981 (Ka = 0.1543, Ks = 0.3958)

APOC1 ENSG00000130208 (Human)

Gene Details

apolipoprotein C-I

External Links

Gene Match (Ensembl Protein ID: ENSP00000465356, Human)

Protein Percentage 63.86%
CDS Percentage 75.9%
Ka/Ks Ratio 0.4059 (Ka = 0.2508, Ks = 0.6178)

Apoc1 ENSMUSG00000040564 (Mouse)

Gene Details

apolipoprotein C-I

External Links

Gene Match (Ensembl Protein ID: ENSMUSP00000104091, Mouse)

Protein Percentage 69.32%
CDS Percentage 76.14%
Ka/Ks Ratio 0.17308 (Ka = 0.1786, Ks = 1.0317)

Genome Location

Sequence Coding sequence

Length: 267 bp    Location: 1758691..1760611   Strand: +
Raw sequence   
>XM_004873143.1
ATGAGGCTCTTCCTGTCGCTTCCCCTCCTGGGGCTCGTCCTGTTCATGGCTTTGGAAGGCCCAGCCCCGGCGCAGGCGGCCCCAGACTTCACCAGCACCTTGGAGGGGCTCCCCGCCAAGCTGAAGGAGTTTGGGAGCATCCTGGAGGACAAGGCCCTGGCAGCCATCGAGCACATCAAGCAGAGTGAACTTCCTGCCAAGACCCGGAACTGGTTCTCTGACGCCTTCAGCAAAGTGCAGGAGAAGTTCAAAGCCACCTTCTCCTGA

Related Sequences

XP_004873200.1 Protein

Apoc1 PREDICTED: apolipoprotein C-I [Heterocephalus glaber]

Length: 88 aa      
>XP_004873200.1
MRLFLSLPLLGLVLFMALEGPAPAQAAPDFTSTLEGLPAKLKEFGSILEDKALAAIEHIKQSELPAKTRNWFSDAFSKVQEKFKATFS