Details from NCBI annotation

Gene Symbol Tspan1
Gene Name tetraspanin 1, transcript variant X2
Entrez Gene ID 101718123

Database interlinks

Part of NW_004624906.1 (Scaffold)

For more information consult the page for NW_004624906.1 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible homologs of the naked mole-rat gene and compared to it.

TSPAN1 ENSCPOG00000005201 (Guinea pig)

Gene Details

tetraspanin 1

External Links

Gene Match (Ensembl Protein ID: ENSCPOP00000004676, Guinea pig)

Protein Percentage 77.97%
CDS Percentage 83.76%
Ka/Ks Ratio 0.40299 (Ka = 0.1432, Ks = 0.3554)

TSPAN1 ENSG00000117472 (Human)

Gene Details

tetraspanin 1

External Links

Gene Match (Ensembl Protein ID: ENSP00000361072, Human)

Protein Percentage 76.89%
CDS Percentage 83.61%
Ka/Ks Ratio 0.43621 (Ka = 0.1495, Ks = 0.3427)

Tspan1 ENSMUSG00000028699 (Mouse)

Gene Details

tetraspanin 1

External Links

Gene Match (Ensembl Protein ID: ENSMUSP00000030465, Mouse)

Protein Percentage 72.27%
CDS Percentage 79.69%
Ka/Ks Ratio 0.50011 (Ka = 0.2013, Ks = 0.4024)

Tspan1 ENSRNOG00000023320 (Rat)

Gene Details

tetraspanin 1 (Tspan1), mRNA

External Links

Gene Match (Ensembl Protein ID: ENSRNOP00000018766, Rat)

Protein Percentage 75.21%
CDS Percentage 79.55%
Ka/Ks Ratio 0.35696 (Ka = 0.1805, Ks = 0.5056)

Genome Location

Sequence Coding sequence

Length: 717 bp    Location: 2113627..2118556   Strand: +
>XM_004872949.1
ATGGGGTGCTTCAGCTTCCTTAAAACCATGACGATTATCTTCAATACACTCATCTTCCTGAGTGGTGCAGCCCTGTTGGCTGTGGGAATCTGGGTGTCAGTCGATGGGCCATCCTTCATGAAGATGTTTGGGTCGCAGTCTTCCAGTGCCATGCAGTTTGTCAACGTGGGCTACTTCCTCATCGCGGCTGGTGCTGTGCTCTTTGTTCTTGGTTTCCTGGGCTGCTACGGTGCTCTGTCTGAGAACAAGTGTGCACTCATGACGTTCTTCATCCTCCTCCTCATCATCTTCATTGCTGAGCTTGCAGCTGCTGTGGTGGCTTTGGTGTATACCACAATGGCTGAGGAATTCCTGTCAAGGCTGGTAGTGCCTGCCATCAAGAAAGACTATGGTTCCAGTAATGACTTCACCCAAGTGTGGAACTCCACCATGAAAGGGCTCAAGTGCTGTGGATTCAACAACTACACAGATTTTGAGGACTCACCCTACTTCAAGAATAATAACACCTTTCCTCCCTTCTGTTGCATCAATGGCACAGCTGAGGAATCTTGTACCTTGAAGAAGGCCGAGGAGAGTACCGTACAGGGTTGCTTCCAACAACTTCTAAATAACATCCGAACCAATGCAATCACTGTGGGTGGTGTAGCAGCTGGAATTGCAGCCCTGGAGCTGGCTGCCATGAGTGTTTCCTTGTATCTGTACTGCAATATGAAATAA

Related Sequences

XP_004873006.1 Protein

Tspan1 PREDICTED: tetraspanin-1 isoform X2 [Heterocephalus glaber]

Length: 238 aa      View alignments
>XP_004873006.1
MGCFSFLKTMTIIFNTLIFLSGAALLAVGIWVSVDGPSFMKMFGSQSSSAMQFVNVGYFLIAAGAVLFVLGFLGCYGALSENKCALMTFFILLLIIFIAELAAAVVALVYTTMAEEFLSRLVVPAIKKDYGSSNDFTQVWNSTMKGLKCCGFNNYTDFEDSPYFKNNNTFPPFCCINGTAEESCTLKKAEESTVQGCFQQLLNNIRTNAITVGGVAAGIAALELAAMSVSLYLYCNMK