Sequence details NCBI ID: XM_004872864.1 (Coding sequence)   Best Hit

Details from NCBI annotation

Gene Symbol Tnpo1
Gene Name transportin 1, transcript variant X4
Entrez Gene ID 101713489

Database interlinks

Part of NW_004624905.1 (Scaffold)

For more information consult the page for NW_004624905.1 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible homologs of the naked mole-rat gene and compared to it.

TNPO1 ENSCPOG00000003540 (Guinea pig)

Gene Details

transportin 1

External Links

Gene Match (Ensembl Protein ID: ENSCPOP00000003200, Guinea pig)

Protein Percentage 93.21%
CDS Percentage 91.61%
Ka/Ks Ratio 0.20144 (Ka = 0.05, Ks = 0.248)

TNPO1 ENSG00000083312 (Human)

Gene Details

transportin 1

External Links

Gene Match (Ensembl Protein ID: ENSP00000336712, Human)

Protein Percentage 99.33%
CDS Percentage 95.24%
Ka/Ks Ratio 0.01568 (Ka = 0.0031, Ks = 0.1992)

Tnpo1 ENSMUSG00000009470 (Mouse)

Gene Details

transportin 1

External Links

Gene Match (Ensembl Protein ID: ENSMUSP00000105028, Mouse)

Protein Percentage 98.99%
CDS Percentage 90.49%
Ka/Ks Ratio 0.00999 (Ka = 0.0047, Ks = 0.4727)

Tnpo1 ENSRNOG00000014999 (Rat)

Gene Details

transportin 1 (Tnpo1), mRNA

External Links

Gene Match (Ensembl Protein ID: ENSRNOP00000020543, Rat)

Protein Percentage 98.76%
CDS Percentage 90.04%
Ka/Ks Ratio 0.01172 (Ka = 0.0058, Ks = 0.494)

Genome Location

Sequence Coding sequence

Length: 2673 bp    Location: 1936070..1987399   Strand: +
Raw sequence   
>XM_004872864.1
ATGGAGTATGAGTGGAAACCTGACGAGCAAGGGCTTCAGCAAATCCTGCAGCTGCTGAAGGAGTCTCAGTCCCCGGACACCACCATTCAGAGGACTGTGCAACAAAAACTGGAACAGCTCAATCAGTATCCGGATTTTAACAACTACTTGATTTTTGTCCTTACAAAATTAAAATCTGAAGATGAACCTACAAGATCACTGAGTGGTCTCATCTTGAAGAATAATGTGAAAGCACATTTTCAGAACTTCCCAAATGGTGTAACAGACTTTATTAAAAGTGAATGTTTAAATAATATCGGTGACTCCTCTCCCTTGATCAGAGCCACTGTAGGTATTTTGATTACAACCATTGCCTCCAAGGGAGAATTGCAAAACTGGCCTGACCTCTTACCAAAACTCTGTAGCCTGTTGGATTCTGAAGATTACAACACCTGTGAGGGAGCATTTGGTGCCCTTCAGAAAATATGTGAAGATTCTGCTGAGATTTTAGATAGTGATGTTTTAGATCGCCCTCTCAACATCATGATTCCCAAATTTTTACAATTCTTCAAGCACAATAGTCCCAAAATAAGGTCTCATGCTGTTGCATGTGTCAATCAGTTTATCATCAGCAGGACTCAAGCCCTGATGATGCATATTGATTCTTTTATTGAGAATCTCTTTGCATTGGCTGGTGATGAAGAACCAGAGGTACGGAAAAATGTGTGCCGAGCACTTGTGATGTTGCTTGAAGTTCGAATGGATCGCCTGCTTCCTCACATGCATAATATAGTTGAGTACATGCTGCAAAGGACCCAAGATCAAGATGAAAATGTGGCTTTGGAAGCTTGTGAATTTTGGCTCACTTTGGCTGAGCAACCAATATGCAAAGATGTGCTTGTGAGACATCTTCCTAAGTTGATTCCTGTGTTAGTGAATGGCATGAAGTACTCAGATATAGATATTATCCTGCTTAAGGGTGATGTTGAAGAGGATGAAACAATTCCTGATAGTGAACAAGATATAAGGCCACGTTTTCATAGATCAAGGACAGTGGCTCAGCAGCATGATGAAGATGGAATTGAAGAGGAAGAGGAAGATGATGATGAAATTGATGATGATGATACAATTTCTGACTGGAATCTAAGAAAATGTTCTGCTGCTGCCCTAGATGTTCTTGCAAATGTTTATCGTGATGAGCTCTTGCCACATATTTTGCCTCTTTTGAAAGAATTACTTTTTCATCATGAATGGGTTGTTAAAGAATCGGGCATCTTGGTTTTAGGAGCAATTGCTGAAGGTTGCATGCAGGGTATGATTCCATACCTGCCTGAGCTCATTCCTCACCTTATTCAGTGCCTCTCTGATAAAAAGGCTCTTGTGCGTTCCATAACATGCTGGACTCTTAGTCGCTATGCACACTGGGTAGTCAGCCAGCCACCGGACACATACCTAAAGCCATTAATGACAGAGTTGCTAAAGCGTATCTTGGATAGCAACAAGAGAGTACAAGAAGCTGCCTGCAGTGCCTTTGCTACTCTAGAGGAGGAGGCTTGTACAGAACTTGTTCCTTATCTTGCATATATACTTGATACTCTGGTCTTTGCATTTAGTAAATACCAGCATAAGAACCTGCTCATTCTTTATGATGCCATAGGAACATTAGCAGATTCAGTTGGACATCATTTAAACAAACCAGAATATATTCAGATGCTAATGCCTCCACTGATCCAGAAATGGAACATGTTAAAGGATGAAGATAAAGATCTCTTCCCTTTACTTGAGTGCCTATCTTCAGTTGCCACAGCCCTGCAGTCTGGCTTCCTGCCATACTGTGAACCTGTGTATCAGCGTTGTGTAAACCTAGTACAGAAGACTCTTGCACAAGCTATGCTAAACAATGCTCAACCAGATCAATATGAGGCTCCAGATAAAGATTTTATGATCGTAGCTCTTGATTTACTCAGTGGCCTAGCTGAAGGACTTGGAGGCAACATTGAACAGCTGGTAGCCCGAAGTAACATCCTAACATTAATGTATCAGTGCATGCAGGATAAAATGCCAGAAGTTCGACAGAGTTCATTTGCACTATTAGGTGACCTGACTAAAGCTTGCTTTCAGCATGTTAAGCCTTTTATAGCTGATTTTATGCCAATATTGGGAACCAATCTAAATCCAGAGTTCATTTCAGTCTGCAACAATGCCACATGGGCAATTGGAGAAATTTCCATTCAAATGGGTATAGAGATGCAGCCTTATATTCCTATGGTGTTGCACCAGCTTGTAGAAATCATTAACAGACCCAACGCACCAAAGACGTTGTTGGAGAATACAGCAATAACAATTGGTCGTCTTGGTTACGTTTGTCCTCAAGAGGTGGCCCCCATGCTACAGCAGTTTATAAGACCCTGGTGTACCTCTCTGAGAAACATAAGAGACAATGAGGAAAAGGATTCAGCATTCCGTGGGATTTGTACCATGATCAGTGTGAATCCCAGTGGCGTAATCCAAGATTTTATATTTTTTTGTGATGCTGTTGCATCATGGATTAACCCAAAAGATGATCTCAGAGACATGTTCTGTAAGATCCTTCATGGATTTAAAAATCAAGTTGGGGATGAAAATTGGAGGCGTTTCTCCGACCAGTTTCCTCTTCCTTTAAAAGAGCGTCTTGCAGCTTTTTATGGTGTTTAA

Related Sequences

XP_004872921.1 Protein

Tnpo1 PREDICTED: transportin-1 isoform X4 [Heterocephalus glaber]

Length: 890 aa      View alignments
>XP_004872921.1
MEYEWKPDEQGLQQILQLLKESQSPDTTIQRTVQQKLEQLNQYPDFNNYLIFVLTKLKSEDEPTRSLSGLILKNNVKAHFQNFPNGVTDFIKSECLNNIGDSSPLIRATVGILITTIASKGELQNWPDLLPKLCSLLDSEDYNTCEGAFGALQKICEDSAEILDSDVLDRPLNIMIPKFLQFFKHNSPKIRSHAVACVNQFIISRTQALMMHIDSFIENLFALAGDEEPEVRKNVCRALVMLLEVRMDRLLPHMHNIVEYMLQRTQDQDENVALEACEFWLTLAEQPICKDVLVRHLPKLIPVLVNGMKYSDIDIILLKGDVEEDETIPDSEQDIRPRFHRSRTVAQQHDEDGIEEEEEDDDEIDDDDTISDWNLRKCSAAALDVLANVYRDELLPHILPLLKELLFHHEWVVKESGILVLGAIAEGCMQGMIPYLPELIPHLIQCLSDKKALVRSITCWTLSRYAHWVVSQPPDTYLKPLMTELLKRILDSNKRVQEAACSAFATLEEEACTELVPYLAYILDTLVFAFSKYQHKNLLILYDAIGTLADSVGHHLNKPEYIQMLMPPLIQKWNMLKDEDKDLFPLLECLSSVATALQSGFLPYCEPVYQRCVNLVQKTLAQAMLNNAQPDQYEAPDKDFMIVALDLLSGLAEGLGGNIEQLVARSNILTLMYQCMQDKMPEVRQSSFALLGDLTKACFQHVKPFIADFMPILGTNLNPEFISVCNNATWAIGEISIQMGIEMQPYIPMVLHQLVEIINRPNAPKTLLENTAITIGRLGYVCPQEVAPMLQQFIRPWCTSLRNIRDNEEKDSAFRGICTMISVNPSGVIQDFIFFCDAVASWINPKDDLRDMFCKILHGFKNQVGDENWRRFSDQFPLPLKERLAAFYGV