Sequence details NCBI ID: XM_004872849.1 (Coding sequence)   Best Hit

Details from NCBI annotation

Gene Symbol Smn1
Gene Name survival of motor neuron 1, telomeric, transcript variant X4
Entrez Gene ID 101706874

Database interlinks

Part of NW_004624905.1 (Scaffold)

For more information consult the page for NW_004624905.1 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible homologs of the naked mole-rat gene and compared to it.

ENSCPOG00000012328 (Guinea pig)

Gene Details

Uncharacterized protein

External Links

Gene Match (Ensembl Protein ID: ENSCPOP00000011091, Guinea pig)

Protein Percentage 88.85%
CDS Percentage 89.3%
Ka/Ks Ratio 0.1788 (Ka = 0.056, Ks = 0.3131)

Smn1 ENSMUSG00000021645 (Mouse)

Gene Details

survival motor neuron 1

External Links

Gene Match (Ensembl Protein ID: ENSMUSP00000022147, Mouse)

Protein Percentage 80.35%
CDS Percentage 81.52%
Ka/Ks Ratio 0.16356 (Ka = 0.1091, Ks = 0.6673)

Smn1 ENSRNOG00000018067 (Rat)

Gene Details

survival of motor neuron 1, telomeric (Smn1), mRNA

External Links

Gene Match (Ensembl Protein ID: ENSRNOP00000024456, Rat)

Protein Percentage 79.3%
CDS Percentage 81.87%
Ka/Ks Ratio 0.19518 (Ka = 0.1162, Ks = 0.5952)

Genome Location

Sequence Coding sequence

Length: 891 bp    Location: 508021..492904   Strand: -
Raw sequence   
>XM_004872849.1
ATGGCGACGGGCGGCAACGGCGATGGCGGCTGCGTCCCGGAGCAGGAAGACTCTGTGCTGTTCCGGCGTGGTACAGGCCAGAGTGATGATTCTGACATCTGGGATGACACAGCATTGATAAAAGCTTACGATAAAGCTGTGGCTTCCTTTAAGTATGCTCTAAAGAATGGTGACATTTCAGATAAACCAAAAGGTGAAACTTCAGACAAACCAAAAGGCACACCTAGAAGAAAACCTTTTAAGAAGAGTAAAAGCCAAAAGAAGACTATCACAGCTCCCTTGAAACAGTGGAAAGTGGGTGACAGATGCTCTGCCGTTTGGTCAGAAGATGGCTGCATTTACCCAGCTACCATCACTTCCATTGATTTGAAGAGAGAAATGTGTGTCGTGGTCTACACTGGATATGGAAACAGAGAGGAGCAAACTCTGTCTGATCTGCTTCCCCAGACCTGTGAGGCAGCTAACAACATGGAACAGAATGCTCAGGAGAATGAAAATGAAAGTCAGGTTTCAACGGATGAAAGTGAGAACTCTTCCAAGTCTCCGGGAAGTAAACCAAGTAACATCAGGTCAAAAGCTAGGCCCTGGAACTCCTTTTTCCCTCCGCCACCACCCATTTCTGGTTCGGGATTGGGACCCAGAAAGCCAGGTCTAAAATTCAGTGGCCCACCTCCGCCACCACCACCACACTTCCTGTCATGCTGGCTGCCTCCACTTCCGTCTGGACCACCAATGATCCCCCCACCACCTCCTATCTGTCCAGACTCGTTCGATGATGCAGACGCGCTAGGCAGCATGCTGATGTCATGGTACATGAGTGGCTATCACACTGGCTATTACATGGGTTTCAGACAAAATCAAAAAGAAGGGAGGGGCTCACATTTTAACTGA

Related Sequences

XP_004872906.1 Protein

Smn1 PREDICTED: survival motor neuron protein isoform X4 [Heterocephalus glaber]

Length: 296 aa      
>XP_004872906.1
MATGGNGDGGCVPEQEDSVLFRRGTGQSDDSDIWDDTALIKAYDKAVASFKYALKNGDISDKPKGETSDKPKGTPRRKPFKKSKSQKKTITAPLKQWKVGDRCSAVWSEDGCIYPATITSIDLKREMCVVVYTGYGNREEQTLSDLLPQTCEAANNMEQNAQENENESQVSTDESENSSKSPGSKPSNIRSKARPWNSFFPPPPPISGSGLGPRKPGLKFSGPPPPPPPHFLSCWLPPLPSGPPMIPPPPPICPDSFDDADALGSMLMSWYMSGYHTGYYMGFRQNQKEGRGSHFN