Details from NCBI annotation

Gene Symbol Ocln
Gene Name occludin, transcript variant X4
Entrez Gene ID 101704116

Database interlinks

Part of NW_004624905.1 (Scaffold)

For more information consult the page for NW_004624905.1 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible homologs of the naked mole-rat gene and compared to it.

OCLN ENSCPOG00000005774 (Guinea pig)

Gene Details

occludin

External Links

Gene Match (Ensembl Protein ID: ENSCPOP00000005207, Guinea pig)

Protein Percentage 91.87%
CDS Percentage 90.67%
Ka/Ks Ratio 0.13856 (Ka = 0.0408, Ks = 0.2945)

OCLN ENSG00000197822 (Human)

Gene Details

occludin

External Links

Gene Match (Ensembl Protein ID: ENSP00000347379, Human)

Protein Percentage 90.61%
CDS Percentage 88.25%
Ka/Ks Ratio 0.11246 (Ka = 0.0486, Ks = 0.4322)

Ocln ENSMUSG00000021638 (Mouse)

Gene Details

occludin

External Links

Gene Match (Ensembl Protein ID: ENSMUSP00000065284, Mouse)

Protein Percentage 89.62%
CDS Percentage 84.94%
Ka/Ks Ratio 0.08562 (Ka = 0.0572, Ks = 0.6682)

Ocln ENSRNOG00000018297 (Rat)

Gene Details

occludin (Ocln), mRNA

External Links

Gene Match (Ensembl Protein ID: ENSRNOP00000024674, Rat)

Protein Percentage 87.55%
CDS Percentage 83.78%
Ka/Ks Ratio 0.09047 (Ka = 0.0657, Ks = 0.7262)

Genome Location

Sequence Coding sequence

Length: 1575 bp    Location: 334201..388880   Strand: +
>XM_004872840.1
ATGTCATCAAGGCCTTTTGAAAGCCCACCTCCCTATAGACCTGATGAATTCAAACCAAATCATTATGCACCAAGCAATGACATATATGGTGGAGAAATGCACGTTCGACCGATGCTGTCTCAGCCAGCATATTCTTTTTACCCAGAAGATGAAATCCTTCACTTCTACAAATGGACCTCTCCCCCAGGAGTGATTCGGATTCTGTCTATGCTCATTATTGTGATGTGCATAGCTATATTTGCCTGTGTTGCCTCCACGCTCGCCTGGGATAGAGGCTATGGAACTGGCCTTCTAGGAGGCGGCATCGGCTATCCTTATGGAGGAAGTGGCTTTAGTGGCTACGGAAGTGGCTATGGGTATGGTTATGGCTACGGTTATGGCTATGGAGCAGGCTACACGGATCCAAGAGCAGCCAAGGGCTTCCTCTTGGCCATGGCTGCCTTTTGTTTCATTGCTTCCTTGGTGATATTTGTTACCAGCGTTATAAGATCTGAGTTGTCTAGAACAAGGAGATATTACTTGACTGTGATAATACTGAGTGCCATCCTGGGCATCATGGTGTTTATTGCCACAATCGTCTACATAATGGGTGTCAACCCCACTGCCCAGGCATCTGGATCTATGTATGGCTCACAGATATATGCCCTCTGCAACCAGTTTTATGCACCTGCAGTTAGTGGGCTCTACATGGACCAGTATTTGTATCACTACTGTGTGGTGGATCCCCAGGAGGCTATTGCCATTGTGCTGGGATTCCTCATTGTTGTGGCTTTTGCTTTAATAATTTTCTTTGCTGTGAGAACTCGAGGAAAGATGGACCGTTATGATAAGTCTAATATTTTGTGGGACAAGGAACGCATTTATGATGAGCAGCCCCCCAATGTTGAAGAATGGGTTAAAAACGTTTCTGCAGGCACACAAGACATGCCTCCACCCCCGTCTGACTATGTGGAGAGAGTTGACAGTTCCATGGCATACTCTTCCAATGGCAAAGTGAATGGCAAGCAGCCCTATCCAGAACCTTCCTATAAGTCAACACCTTTGGTGCCTGAAGTGGCGCAGGAGCTTCCCCTCACCTCCCCTGTGGACGACTTCCGGCAGCCTCGGTACAGCAGCACCAGTAACTTCGAGACACCTTCAAAGAGGGCTCCCACGAAGGGAAAAGCAGGCAAGCTGAAGAAAGCAGAGCAGGACCACTACGAAACAGACTATACCACGGGCGGCGAGTCCTGTGACGAGCTGGAGGAGGACTGGATCAGAGAGTATCCACCCATCACTTCAGATCAACAAAGACAGCTCTACAAGAGAAACTTTGACAGTGGCCTTCAGGAATACAAGAGTTTGCAAGCAGAACTTGATGATGTCAATAAAGAACTCTCCCGTTTAGATAAAGAATTGGATGACTATAGAGAAGAAAGTGAAGAGTACATGACTGCTGCGGATGAATACAACAGACTGAAGGAAGTTAAGAGATCAGCAGATTACAGAAATAAGAGGAATTACTGCAAGCAGCTGAAGAGCAAATTATCACACATTAAGAAGATGGTCGGAGACTATGATAGACAGAAAACATAG

Related Sequences

XP_004872897.1 Protein

Ocln PREDICTED: occludin isoform X4 [Heterocephalus glaber]

Length: 524 aa      View alignments
>XP_004872897.1
MSSRPFESPPPYRPDEFKPNHYAPSNDIYGGEMHVRPMLSQPAYSFYPEDEILHFYKWTSPPGVIRILSMLIIVMCIAIFACVASTLAWDRGYGTGLLGGGIGYPYGGSGFSGYGSGYGYGYGYGYGYGAGYTDPRAAKGFLLAMAAFCFIASLVIFVTSVIRSELSRTRRYYLTVIILSAILGIMVFIATIVYIMGVNPTAQASGSMYGSQIYALCNQFYAPAVSGLYMDQYLYHYCVVDPQEAIAIVLGFLIVVAFALIIFFAVRTRGKMDRYDKSNILWDKERIYDEQPPNVEEWVKNVSAGTQDMPPPPSDYVERVDSSMAYSSNGKVNGKQPYPEPSYKSTPLVPEVAQELPLTSPVDDFRQPRYSSTSNFETPSKRAPTKGKAGKLKKAEQDHYETDYTTGGESCDELEEDWIREYPPITSDQQRQLYKRNFDSGLQEYKSLQAELDDVNKELSRLDKELDDYREESEEYMTAADEYNRLKEVKRSADYRNKRNYCKQLKSKLSHIKKMVGDYDRQKT