Details from NCBI annotation

Gene Symbol Pde1b
Gene Name phosphodiesterase 1B, calmodulin-dependent, transcript variant X1
Entrez Gene ID 101718122

Database interlinks

Part of NW_004624904.1 (Scaffold)

For more information consult the page for NW_004624904.1 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible homologs of the naked mole-rat gene and compared to it.

PDE1B ENSCPOG00000015102 (Guinea pig)

Gene Details

phosphodiesterase 1B, calmodulin-dependent

External Links

Gene Match (Ensembl Protein ID: ENSCPOP00000013613, Guinea pig)

Protein Percentage 98.88%
CDS Percentage 95.33%
Ka/Ks Ratio 0.02537 (Ka = 0.0051, Ks = 0.2002)

PDE1B ENSG00000123360 (Human)

Gene Details

phosphodiesterase 1B, calmodulin-dependent

External Links

Gene Match (Ensembl Protein ID: ENSP00000243052, Human)

Protein Percentage 97.01%
CDS Percentage 92.65%
Ka/Ks Ratio 0.04999 (Ka = 0.0166, Ks = 0.3328)

Pde1b ENSMUSG00000022489 (Mouse)

Gene Details

phosphodiesterase 1B, Ca2+-calmodulin dependent

External Links

Gene Match (Ensembl Protein ID: ENSMUSP00000023132, Mouse)

Protein Percentage 97.76%
CDS Percentage 91.03%
Ka/Ks Ratio 0.0261 (Ka = 0.0118, Ks = 0.4517)

Pde1b ENSRNOG00000036828 (Rat)

Gene Details

phosphodiesterase 1B, calmodulin-dependent (Pde1b), mRNA

External Links

Gene Match (Ensembl Protein ID: ENSRNOP00000052147, Rat)

Protein Percentage 97.57%
CDS Percentage 90.97%
Ka/Ks Ratio 0.02709 (Ka = 0.0126, Ks = 0.4639)

Genome Location

Sequence Coding sequence

Length: 1608 bp    Location: 2580293..2607960   Strand: +
>XM_004872813.1
ATGGAGCTGTCTCCCCGAAGCCCTCCAGAGATGCTGGAGTCGGATTGCCCGTCACCCCTGGAGCTGAAGTCAGCCCCCAGCAAGAAGATGTGGATTAAGCTTCGGTCTCTGCTGCGCTACATGGTGAAGCAGTTGGAGAATGGGGAGATAAACATTGAGGAGCTGAAGAAAAACCTAGAGTACACAGCTTCTCTGCTGGAGGCTGTCTACATCGATGAGACACGCCAAATCTTGGACACGGAGGATGAGCTGCAGGAGCTTCGCTCAGATGCTGTGCCTTCGGAGGTGCGGGACTGGCTGGCCTCCACCTTCACCCAGCAAACCCGAGCCAAAGGCCGCCGAGCGGAGGAGAAGCCCAAGTTCAGAAGCATCGTGCACGCTGTGCAGGCTGGGATCTTCGTGGAACGGATGTTCCGGAGAACATATACCTCTGTGGGCCCCACCTATTCCACTGCAGTCCACAACTGTCTCAAGAACCTGGATCTCTGGTGCTTTGATGTCTTTTCCTTGAACCGGGCCGCAGATGACCACGCCCTGAAGACCATTGTTTTTGAGTTGCTGACTCGACATAACCTCATCAGCCGATTCAAGATTCCCACTGTTTTTTTGATGTCTTTCCTGGAAGCCTTGGAGACAGGCTATGGGAAGTACAAGAATCCTTACCACAACCAGATCCATGCAGCTGATGTTACTCAGACAGTCCATTGCTTCCTGCTCCGCACAGGGATGGTGCACTGCCTGTCAGAGATTGAGGTCTTGGCCATCATCTTTGCCGCAGCCATCCATGACTATGAGCACACAGGCACGACCAACAGCTTCCACATCCAGACCAAGTCAGAATGTGCCATCCTATACAATGACCGTTCCGTGCTGGAAAATCACCACATCAGCTCTGTGTTCCGGATGATGCAGGACGACGAGATGAACATTTTCATCAACCTCACTAAAGATGAGTTTGTAGAGCTGCGAGCATTGGTCATCGAGATGGTGTTGGCCACAGACATGTCCTGCCATTTCCAGCAAGTGAAGTCCATGAAGACAGCCTTGCAGCAGCTAGAGAGGATCGACAAGTCCAAGGCCCTGTCACTTCTCCTCCATGCTGCTGACATCAGCCATCCAACAAAGCAATGGTCGGTCCACAGCCGCTGGACAAAGGCCCTCATGGAGGAATTCTTCCGCCAGGGTGACAAGGAGGCAGAGCTTGGCCTGCCCTTTTCTCCGCTCTGCGATCGCACTTCCACTCTGGTGGCCCAGTCCCAGATTGGTTTCATTGACTTCATTGTGGAGCCCACATTCTCTGTGCTGACTGATGTGGCAGAGAAGAGTGTCCAGCCCCTGGCAGATGAGGACTCCAAGACCAAAAACCAGCCCAGCTTCCAGTGGCGCCAGCCTTCTCTAGATGTGGATGTGGGAGACCCCAACCCTGATGTGGTCAGCTTCCGCTCCACCTGGACCAAGTACATTCAGGAGAACAAACAGAAATGGAAGGAACGGGCTGCGAGTGGCATCACCAACCAGATGTCGATTGATGAGCTGTCCCCCTGTGAAGAAGAGGCCCCACCCGCCCCTGCGGAAGATGAACACAACCAGAATGGGAATCTGGACTAG

Related Sequences

XP_004872870.1 Protein

Pde1b PREDICTED: calcium/calmodulin-dependent 3',5'-cyclic nucleotide phosphodiesterase 1B isoform X1 [Heterocephalus glaber]

Length: 535 aa      View alignments
>XP_004872870.1
MELSPRSPPEMLESDCPSPLELKSAPSKKMWIKLRSLLRYMVKQLENGEINIEELKKNLEYTASLLEAVYIDETRQILDTEDELQELRSDAVPSEVRDWLASTFTQQTRAKGRRAEEKPKFRSIVHAVQAGIFVERMFRRTYTSVGPTYSTAVHNCLKNLDLWCFDVFSLNRAADDHALKTIVFELLTRHNLISRFKIPTVFLMSFLEALETGYGKYKNPYHNQIHAADVTQTVHCFLLRTGMVHCLSEIEVLAIIFAAAIHDYEHTGTTNSFHIQTKSECAILYNDRSVLENHHISSVFRMMQDDEMNIFINLTKDEFVELRALVIEMVLATDMSCHFQQVKSMKTALQQLERIDKSKALSLLLHAADISHPTKQWSVHSRWTKALMEEFFRQGDKEAELGLPFSPLCDRTSTLVAQSQIGFIDFIVEPTFSVLTDVAEKSVQPLADEDSKTKNQPSFQWRQPSLDVDVGDPNPDVVSFRSTWTKYIQENKQKWKERAASGITNQMSIDELSPCEEEAPPAPAEDEHNQNGNLD