Sequence details NCBI ID: XM_004872778.1 (Coding sequence)   Best Hit

Details from NCBI annotation

Gene Symbol Hoxc10
Gene Name homeobox C10
Entrez Gene ID 101707486

Database interlinks

Part of NW_004624904.1 (Scaffold)

For more information consult the page for NW_004624904.1 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible homologs of the naked mole-rat gene and compared to it.

HOXC10 ENSCPOG00000009442 (Guinea pig)

Gene Details

homeobox C10

External Links

Gene Match (Ensembl Protein ID: ENSCPOP00000008476, Guinea pig)

Protein Percentage 97.66%
CDS Percentage 97.17%
Ka/Ks Ratio 0.09445 (Ka = 0.01, Ks = 0.1061)

HOXC10 ENSG00000180818 (Human)

Gene Details

homeobox C10

External Links

Gene Match (Ensembl Protein ID: ENSP00000307321, Human)

Protein Percentage 97.08%
CDS Percentage 95.71%
Ka/Ks Ratio 0.07022 (Ka = 0.0126, Ks = 0.1788)

Hoxc10 ENSMUSG00000022484 (Mouse)

Gene Details

homeobox C10

External Links

Gene Match (Ensembl Protein ID: ENSMUSP00000001699, Mouse)

Protein Percentage 97.08%
CDS Percentage 94.35%
Ka/Ks Ratio 0.04862 (Ka = 0.0126, Ks = 0.2597)

Hoxc10 ENSRNOG00000016149 (Rat)

Gene Details

Homeo box C10, isoform CRA_b; Protein Hoxc10

External Links

Gene Match (Ensembl Protein ID: ENSRNOP00000021647, Rat)

Protein Percentage 97.08%
CDS Percentage 94.64%
Ka/Ks Ratio 0.05238 (Ka = 0.0126, Ks = 0.2409)

Genome Location

Sequence Coding sequence

Length: 1029 bp    Location: 2040029..2045030   Strand: +
Raw sequence   
>XM_004872778.1
ATGACATGCCCTCGCAATGTAACTCCGAACTCATACGCCGAGCCCTTGGCTGCGCCCGGCGGAGGAGAGCGCTATAGCCGGAGCGCAGGCATGTATATGCAATCGGGGAGTGACTTCAACTGCGGGGTAATGAGGGGCTGCGGGCTCGCGCCCTCGCTCTCCAAGAGGGACGAGGGCGGCAGTCCCAATCTCGCCCTCAACACCTACCCGTCCTACCTCTCGCAGCTAGACTCCTGGGGCGACCCCAAAGCCGCCTACCGCCTGGAACAACCTGTTGGCAGGCCGCTGTCCTCCTGCTCCTACCCACCTAGTGTCAAGGAGGAGAATGTCTGCTGCATGTACAGCGCAGAGAAGCGGGCGAAAAGTGGCCCCGAGGCAGCGCTCTACTCCCACCCCCTGCCGGAGTCCTGCCTCGGGGATCACGAGGTGCCCGTGCCCAGCTACTACCGCGCCAGCCCGAGCTACTCGGCGCTGGACAAGACGCCCCACTGTGCCGGAGCCAACGACTTCGAAGCCCCTTTCGAGCAGCGAGCCAGTCTCAACCCTCGCTCGGAACATCTGGAATCGCCTCAGCTCGGGGGCAAAGTGAGTTTCCCTGAGACCCCCAAGTCCGACAGCCAGACTCCCAGCCCCAACGAGATCAAGACGGAGCAGAGCCTGGCGGGGCCAAAAGGCAGCCCCTCAGAGAACGGAAAGGACCGGGCCAAGACCGTCGACTCCAGCCCAGACACCTCGGATAACGAAGCTAAAGAGGAGATAAAGGCAGAAAACACCACAGGAAATTGGCTGACAGCAAAGAGCGGAAGGAAGAAGAGGTGTCCCTATACTAAACACCAGACGCTGGAATTGGAGAAAGAATTTCTGTTCAATATGTATTTGACGCGAGAGCGCCGCCTGGAGATTAGCAAGACCATTAACCTTACAGACAGACAAGTCAAAATCTGGTTTCAAAATCGCAGAATGAAACTCAAGAAAATGAACCGAGAGAATCGGATCCGGGAACTGACCTCCAATTTTAATTTCACCTGA

Related Sequences

XP_004872835.1 Protein

Hoxc10 PREDICTED: homeobox protein Hox-C10 [Heterocephalus glaber]

Length: 342 aa      View alignments
>XP_004872835.1
MTCPRNVTPNSYAEPLAAPGGGERYSRSAGMYMQSGSDFNCGVMRGCGLAPSLSKRDEGGSPNLALNTYPSYLSQLDSWGDPKAAYRLEQPVGRPLSSCSYPPSVKEENVCCMYSAEKRAKSGPEAALYSHPLPESCLGDHEVPVPSYYRASPSYSALDKTPHCAGANDFEAPFEQRASLNPRSEHLESPQLGGKVSFPETPKSDSQTPSPNEIKTEQSLAGPKGSPSENGKDRAKTVDSSPDTSDNEAKEEIKAENTTGNWLTAKSGRKKRCPYTKHQTLELEKEFLFNMYLTRERRLEISKTINLTDRQVKIWFQNRRMKLKKMNRENRIRELTSNFNFT