Details from NCBI annotation

Gene Symbol Rgag4
Gene Name retrotransposon gag domain containing 4
Entrez Gene ID 101723845

Database interlinks

Part of NW_004624903.1 (Scaffold)

For more information consult the page for NW_004624903.1 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible homologs of the naked mole-rat gene and compared to it.

RGAG4 ENSCPOG00000021990 (Guinea pig)

Gene Details

retrotransposon gag domain containing 4

External Links

Gene Match (Ensembl Protein ID: ENSCPOP00000017901, Guinea pig)

Protein Percentage 89.5%
CDS Percentage 88.78%
Ka/Ks Ratio 0.20265 (Ka = 0.064, Ks = 0.316)

RGAG4 ENSG00000242732 (Human)

Gene Details

retrotransposon gag domain containing 4

External Links

Gene Match (Ensembl Protein ID: ENSP00000441366, Human)

Protein Percentage 75.88%
CDS Percentage 81.34%
Ka/Ks Ratio 0.34501 (Ka = 0.1595, Ks = 0.4624)

Rgag4 ENSMUSG00000049191 (Mouse)

Gene Details

retrotransposon gag domain containing 4

External Links

Gene Match (Ensembl Protein ID: ENSMUSP00000109261, Mouse)

Protein Percentage 75.7%
CDS Percentage 79.9%
Ka/Ks Ratio 0.23964 (Ka = 0.1547, Ks = 0.6456)

Rgag4 ENSRNOG00000045779 (Rat)

Gene Details

Protein LOC100911832; RCG36266

External Links

Gene Match (Ensembl Protein ID: ENSRNOP00000065929, Rat)

Protein Percentage 75.7%
CDS Percentage 79.25%
Ka/Ks Ratio 0.2362 (Ka = 0.1601, Ks = 0.6778)

Genome Location

Sequence Coding sequence

Length: 1722 bp    Location: 2375202..2371634   Strand: -
>XM_004872656.1
ATGTCGGAGGCGGCAGGAAATCTCAATAGCCTCCGCATGGCAAATGTAGCCCTGCAAGAAGAATTAAATGCCCTTCGCGGGGAGAATGCCAGTTTGGGCCTTCAGCTTGGAAGAGCCCTGGCCGAGGTTAATTCCTTGCGGGGCAATGTCTCGAGCTATATCCGCTGGCCAATGCCCGTAGTGCCTGTACTGGCCGAGGAGAACTTTGAGTTCCCGCTCAATGAGATCGACACCATGCCCGAGGAAGAGGTCCCCTTCTTGTGCTGGCCTCCCCCACGAACGGATTCTGACTATGTCTCGAATGATCTTTTGATTAACGTGGTCCAGGACTATATGACCCCCGAAGGGTCCACCGACCCTCCCCTGCCACCCAGCCCGCCCCCGCTGGAGCTGCCCTCCCCGGCGTCAAAGGAGCCGCCCCCACAGCCGCTTCTGCCACCACTGGAGCGGCCTGACATAGAGCCCTTTTCAGGCAACCCAGTCTACCTGGCCGAATTCCTGATGCAGCTAGAGACCTTCATAGCTGACCATGAAGATCATTTTCCCGGGGGCGCTGAGCGGGTGGCCTTTCTGATCTCCTTTTTCACTGGGGAAGCTAGGGATTGGGCCATCTCTGTCACCCAGGAAGGAAGCTCCCTGCATGCCAACTTCCCTCGCTTCCTGGATGAAATCCGTAAGGAATTCTGTGGCCCCATCCCCCCACGTGTAGCTAAAAAGGCCATCCGAAAGCTCAAACAGGGAGACTGTACCCTGGGCAGCTATGCCGATGCTTTTCAGTACCTGGCCCAATTCTTGCCTTGGGATGACTGCCGCCTCCAAAACCAATTTCTCAAAGGCCTGTCAGAATTCTTCAGAAAGGAGCTCTTATGGTCAACTGAAATGGCTGACCTAGACGAGCTGATTCTTGAGTGCGTGGAGATAGAAAGAAAAGTGCGTGTCCCCAAGCCGATGCCACTCCCTGGGGTTCGCAATGTTGTTTTCCCTTTTGCTTCGAACCTTAATGAGGATGAAACTGGAGGCGAAGAGCACTACAGTGAAGATGAGGATGGAGAGGCATGTAGGAGTGGGCTTTACCTGAAGGACCAGCCAAATCACATGAGGGTTTTCCAGCAAGAGATGAGGGAGGAGGAGGAAGAGGAGATGGGGAAGGAGGAGGAAGAAATGAAGGAGGAGGAGGACGAAGAGGAGGAGGAGGAGGACTATGATGAGGAGGATGAGGATGAGGATGAGGAGGATGAGGATGAAGATGAGGATGAAGATGAGGATGAAGATGAGGATGAAGATGAGGATGAGGAAGAGGAGGAAAAGGAGGAGGAGGAGGAAGAGGAGGAGGAGGAGGAGGAGGAGGAAGAGATGAAACCAAAAGAAGATGAGGAAGAGATGAACAAAAATGAGGATGATGACCTGCAACAGCTGATGGAGATGGAGGAGCCTCTCCTTGTTGACACTTCAACCCAAACTATTAGCTCTGAAATATACCATGCCGAGAATTTCCTGGATGAATCGCCTCCTATACAGCCTAGCAGACGGAGGAACCAGAATCGAGTTCCACTTCTGGAGGGCCTTCCAGGTACCAATTCACCATTCTACAGCTCGCCACCACTGATTCGCCGCGCAGGTCGCATGGGGCAACGCCAAATTCGAAGACGCCCACCAGTGCTGTTCCGCCTCACTCCGAGACAGGGGGGCCACCGAGCTGCTCGTGGCCGAATTCGCGTGTGA

Related Sequences

XP_004872713.1 Protein

Rgag4 PREDICTED: retrotransposon gag domain-containing protein 4 [Heterocephalus glaber]

Length: 573 aa      View alignments
>XP_004872713.1
MSEAAGNLNSLRMANVALQEELNALRGENASLGLQLGRALAEVNSLRGNVSSYIRWPMPVVPVLAEENFEFPLNEIDTMPEEEVPFLCWPPPRTDSDYVSNDLLINVVQDYMTPEGSTDPPLPPSPPPLELPSPASKEPPPQPLLPPLERPDIEPFSGNPVYLAEFLMQLETFIADHEDHFPGGAERVAFLISFFTGEARDWAISVTQEGSSLHANFPRFLDEIRKEFCGPIPPRVAKKAIRKLKQGDCTLGSYADAFQYLAQFLPWDDCRLQNQFLKGLSEFFRKELLWSTEMADLDELILECVEIERKVRVPKPMPLPGVRNVVFPFASNLNEDETGGEEHYSEDEDGEACRSGLYLKDQPNHMRVFQQEMREEEEEEMGKEEEEMKEEEDEEEEEEDYDEEDEDEDEEDEDEDEDEDEDEDEDEDEDEEEEEKEEEEEEEEEEEEEEEMKPKEDEEEMNKNEDDDLQQLMEMEEPLLVDTSTQTISSEIYHAENFLDESPPIQPSRRRNQNRVPLLEGLPGTNSPFYSSPPLIRRAGRMGQRQIRRRPPVLFRLTPRQGGHRAARGRIRV