Details from NCBI annotation

Gene Symbol Lin54
Gene Name lin-54 homolog (C. elegans), transcript variant X3
Entrez Gene ID 101718015

Database interlinks

Part of NW_004624900.1 (Scaffold)

For more information consult the page for NW_004624900.1 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible homologs of the naked mole-rat gene and compared to it.

LIN54 ENSCPOG00000001139 (Guinea pig)

Gene Details

lin-54 homolog (C. elegans)

External Links

Gene Match (Ensembl Protein ID: ENSCPOP00000001027, Guinea pig)

Protein Percentage 95.73%
CDS Percentage 91.01%
Ka/Ks Ratio 0.0785 (Ka = 0.0243, Ks = 0.3098)

LIN54 ENSG00000189308 (Human)

Gene Details

lin-54 homolog (C. elegans)

External Links

Gene Match (Ensembl Protein ID: ENSP00000341947, Human)

Protein Percentage 96.26%
CDS Percentage 91.4%
Ka/Ks Ratio 0.05519 (Ka = 0.0185, Ks = 0.3348)

Lin54 ENSMUSG00000035310 (Mouse)

Gene Details

lin-54 homolog (C. elegans)

External Links

Gene Match (Ensembl Protein ID: ENSMUSP00000123425, Mouse)

Protein Percentage 94.65%
CDS Percentage 89.17%
Ka/Ks Ratio 0.06467 (Ka = 0.0274, Ks = 0.4239)

Lin54 ENSRNOG00000002203 (Rat)

Gene Details

lin-54 homolog (C. elegans) (Lin54), mRNA

External Links

Gene Match (Ensembl Protein ID: ENSRNOP00000003006, Rat)

Protein Percentage 93.85%
CDS Percentage 88.24%
Ka/Ks Ratio 0.06867 (Ka = 0.0316, Ks = 0.4606)

Genome Location

Sequence Coding sequence

Length: 2274 bp    Location: 65137..14467   Strand: -
>XM_004872323.1
ATGGAGGTGGTACCAGCCGAGGTGAATAGCTTGCTTCCAGAGGAGATAATGGACACTGGGATAACATTAGTGGATGAGGATAGTATTGAGGCTGTTATTGTTTCATCTCCAATTCCCATGGAGACAGAACTGGAAGAAATTGTCAACATAAACTCTACTGGTGATTCTGCAGCCACGCCCATTTCCACGGAGCCCATCACAGTGTACAGTAACCACATTAACCAAGTTGCAGTGAATACCACAGTTACTAAAGCAGATTCTAATAGAATGAAACCAGCTTTTCCAAGTGGCCTTCAAAAACTTGGTGCTCAGACTCCTGTGACTATATCAGCCAATCAGATCATTTTAAACAAAGTATCACAGACATCTGATCTTAAACTTGGCAATCAGACCCTTAAGCCAGATGGACAGAAGTTAATTTTAACAACTTTGGGCAAGTCTGGTTCACCAATTGTTTTAGCACTACCCCATAGCCAACTACCCCAGGCTCAGAAAGTTACAACTCAGGCTCAGTCAGGAGATACTAAATTGCCACCGCAGCAGATTAAAGTAGTTACCATTGGAGGGAGGCCAGAGCCGAAACCGGTCATTGGTGTCTCAGCACTGACCCCAGGAAGCCAGCTGATTAATCCTACAGCCCAGCCCTCTGTGGTTCAGACCCAACAGTTAAAAACAGTACAGATTGCTAAGAAGCCTCGAACACCAACCTCTGGCCCAGTAATCACGAAGCTGATCTTTGCAAAACCCATAAATAGTAAAGCAGTTACAGGACAGACAACTCAAGTGTCACCACCAGTCATTGCAGGTAGAGTTCTTTCACAGTCTACTCCTGGAACGCCCTCAAAGACCATAACAATATCTGAAAGTGGTGTTATTGGATCAGCTTTAAACTCTACATCACAGACACCAAATAAAATTGCCATCTCACCTTTGAAATCTCCAAATAAGGCGGTGAAATCAGCCATGCAGACCATCACTGTAGGAGGTGTGAGCACGTCGCAGTTTAAGACAATTATTCCTCTGGCCACTTCGCCCAATGTCCAACAAATCCAAGTGCCTGGCAGCAAGTTCCATTATGTCCGACTTGTCACTGCCACCACCGCCAGCAGCTCCACCCCACCTGCCAGTCAAAACCCCAGCACCAACACTCCGCCTCTGCAGCAAGGTGAATACCCACTTTTCAAAAATAGTGCAAAGCCTGTGGTTGTTAATGCAACCCCAGTGCGGATGTCAGTCCCCTTTGTCCCAGCGCAGGCTGTCAAACAAGTTGTTCCAAAACCAATCAACCCAACTTCACAGATTGTAACCAATACCCAGCCCCAGCAGCGGCTCATCATGCCCGCCACACCACTGCCCCAGATCCAGCCCAACCTCACCAACCTGCCTCCAGGAACAGTCCTGGCCCCAGCCCCAGGGACAGGGAATGTGGGCTATGCAGTGCTTCCGGCTCAGTATGTCACTCAGCTACAGCAGTCTTCATATGTGTCCATAGCAAGCAACTCTAACTTCACTGGGACGCCTGGGATCCAGACCCAGGCAAGGCTTCCATTCAATGGGATAATCCCATCAGAGTCTGCCAGTCGGCCCAGAAAGCCCTGTAATTGTACAAAATCTCTGTGTTTGAAATTATATTGTGATTGCTTTGCAAATGGTGAATTTTGCAACAACTGCAATTGTACTAATTGTTACAACAATTTGGAACATGAAAATGAAAGGCAAAAAGCAATAAAGGCCTGCCTGGACAGAAATCCAGAAGCCTTCAAGCCGAAGATTGGGAAAGGGAAGGAGGGAGAGTCAGACCGACGGCACAGCAAGGGCTGTAACTGTAAGCGCTCAGGGTGTCTCAAGAACTACTGTGAGTGCTACGAGGCAAAAATAATGTGTTCCTCGATATGCAAGTGTATTGGCTGTAAAAATTTTGAAGAAAGCCCAGAAAGAAAGACACTGATGCACTTGGCAGATGCAGCTGAAGTTAGGGTGCAGCAGCAGACAGCGGCCAAGACCAAGCTGTCCTCTCAGATTTCCGACCTGCTTACTCGGCCAGCGCCAGCTTTGAATAGTGGAGGAGGAAAGTTGCCATTCACCTTTGTCACCAAGGAAGTAGCTGAAGCCACATGTAACTGCCTGCTTGCCCAGGCAGAGCAAGCAGACAAGAAGGGGAAGTCAAAGGCAGCTGCTGAGCGAATGATACTGGAGGAATTTGGACGCTGTCTGATGAGTGTCATCAACTCTGCAGGAAAAGCGAAAAGTGACCCTTGTGCCATGAACTGCTGA

Related Sequences

XP_004872380.1 Protein

Lin54 PREDICTED: protein lin-54 homolog isoform X3 [Heterocephalus glaber]

Length: 757 aa      View alignments
>XP_004872380.1
MEVVPAEVNSLLPEEIMDTGITLVDEDSIEAVIVSSPIPMETELEEIVNINSTGDSAATPISTEPITVYSNHINQVAVNTTVTKADSNRMKPAFPSGLQKLGAQTPVTISANQIILNKVSQTSDLKLGNQTLKPDGQKLILTTLGKSGSPIVLALPHSQLPQAQKVTTQAQSGDTKLPPQQIKVVTIGGRPEPKPVIGVSALTPGSQLINPTAQPSVVQTQQLKTVQIAKKPRTPTSGPVITKLIFAKPINSKAVTGQTTQVSPPVIAGRVLSQSTPGTPSKTITISESGVIGSALNSTSQTPNKIAISPLKSPNKAVKSAMQTITVGGVSTSQFKTIIPLATSPNVQQIQVPGSKFHYVRLVTATTASSSTPPASQNPSTNTPPLQQGEYPLFKNSAKPVVVNATPVRMSVPFVPAQAVKQVVPKPINPTSQIVTNTQPQQRLIMPATPLPQIQPNLTNLPPGTVLAPAPGTGNVGYAVLPAQYVTQLQQSSYVSIASNSNFTGTPGIQTQARLPFNGIIPSESASRPRKPCNCTKSLCLKLYCDCFANGEFCNNCNCTNCYNNLEHENERQKAIKACLDRNPEAFKPKIGKGKEGESDRRHSKGCNCKRSGCLKNYCECYEAKIMCSSICKCIGCKNFEESPERKTLMHLADAAEVRVQQQTAAKTKLSSQISDLLTRPAPALNSGGGKLPFTFVTKEVAEATCNCLLAQAEQADKKGKSKAAAERMILEEFGRCLMSVINSAGKAKSDPCAMNC