Sequence details NCBI ID: XM_004872304.1 (Coding sequence)   Best Hit

Details from NCBI annotation

Gene Symbol Col3a1
Gene Name collagen, type III, alpha 1
Entrez Gene ID 101707011

Database interlinks

Part of NW_004624899.1 (Scaffold)

For more information consult the page for NW_004624899.1 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible homologs of the naked mole-rat gene and compared to it.

COL3A1 ENSCPOG00000006836 (Guinea pig)

Gene Details

Uncharacterized protein

External Links

Gene Match (Ensembl Protein ID: ENSCPOP00000006162, Guinea pig)

Protein Percentage 91.94%
CDS Percentage 89.07%
Ka/Ks Ratio 0.1693 (Ka = 0.0538, Ks = 0.3175)

COL3A1 ENSG00000168542 (Human)

Gene Details

collagen, type III, alpha 1

External Links

Gene Match (Ensembl Protein ID: ENSP00000304408, Human)

Protein Percentage 91.03%
CDS Percentage 88.66%
Ka/Ks Ratio 0.15454 (Ka = 0.0551, Ks = 0.3565)

Col3a1 ENSMUSG00000026043 (Mouse)

Gene Details

collagen, type III, alpha 1

External Links

Gene Match (Ensembl Protein ID: ENSMUSP00000085192, Mouse)

Protein Percentage 91.46%
CDS Percentage 86.01%
Ka/Ks Ratio 0.10138 (Ka = 0.0575, Ks = 0.5672)

Col3a1 ENSRNOG00000003357 (Rat)

Gene Details

collagen, type III, alpha 1 (Col3a1), mRNA

External Links

Gene Match (Ensembl Protein ID: ENSRNOP00000004956, Rat)

Protein Percentage 91.72%
CDS Percentage 85.75%
Ka/Ks Ratio 0.09208 (Ka = 0.0557, Ks = 0.6053)

Genome Location

Sequence Coding sequence

Length: 4398 bp    Location: 1230529..1192078   Strand: -
Raw sequence   
>XM_004872304.1
ATGATGAGCTTTGTGCAAAAGGGGACCTGGTTACTTCTTGCTCTGCTTCACCCCACTGTTATTTTGGCGCAACAGACCCCAGAAGTTGATGAAGGAGGATGCACCTATCTTGGTCAATCCTATGCCGCTAGAGATGTCTGGAAGCCAGAACCATGCCAAATATGCGTCTGTGACTCAGGATCAGTTCTCTGTGATGACATAATATGTGATGAAGAAAACTTAGACTGCCCCAACCCAGAAATCCCCTTTGGAGAATGTTGTGCAGCTTGTCCACAACCTTCAACACCTGCTCCTGTCCCCAGTGGTAGAGGACCTCAAGGCCCCAAAGGAGATCCTGGCCCTCCTGGTATTCCTGGGAGAAATGGTGACCCTGGGACCCCAGGACAACCAGGTTCCCCCGGTCCTCCTGGTACCCCTGGCATCTGTCAGTCATGTCCTACTGGCACACAGAACTATTCTCCACAGTTTGACTCATACGATGTCAAGTCTGGAGTAGGAGGAGTCAGTGGCTATCCTGGGCCAGCTGGTCCTCCGGGTCCTCCTGGTCCCCCTGGTACTTCTGGTCATCCTGGTGCCCCTGGTTCTCCAGGATATCAAGGTCCCCCTGGTGAACCTGGACAAGCTGGTCCCGCAGGCCCTCCGGGACCTGCTGGTGCTATAGGTCCAGTCGGTCCTGCTGGAAAAGATGGAGAATCGGGTCGGCCGGGACGAACTGGAGAACGTGGCTTGCCTGGCCCTCCGGGTATCAAAGGCCCAGCTGGCATGCCTGGATTCCCTGGTGTGAAAGGACACAGGGGCTTTGATGGACGAAATGGAGAAAAGGGTGAAACAGGTGCTCCTGGATTAAAGGGTGAAAATGGTCTTCCAGGTGAAAATGGAGCTCCTGGACCCATGGGTCCAAGAGGAGCTCCTGGTGAGAGAGGACGACCAGGACTCCCTGGGGCTGCAGGGACTCGAGGCAATGATGGTGCTCGGGGCAGCGATGGCCAACCGGGCCCCCCTGGTCCCCCTGGAACTGCAGGATTCCCTGGATCTCCTGGTGCTAAGGGTGAAGTTGGACCTGCAGGGTCCCCTGGTTCAAGTGGAGCCCCTGGAGCAAGAGGAGAACCTGGACCTCAGGGACATGCTGGTGCTCAGGGTCCTCCTGGCCCCCCTGGGAATAATGGCAGTCCCGGTGGTAAAGGAGAAATGGGTCCCGCTGGTATTCCTGGTGCTCCTGGACTGATGGGAGCCCGGGGCCCTGCAGGGCCACCTGGTACTAATGGTGCCCCTGGGCAGCGAGGTAGTCCGGGTGAACCTGGTAAGAATGGTGCAAAAGGAGAGCCAGGAGCACGCGGTGAACGTGGTGAAGCTGGCTCCCCAGGTATTCCAGGAACTAAGGGTGAAGATGGCAAAGATGGATCCCCTGGAGAACCCGGAGCAAACGGAGTGCCAGGTGCTGCAGGAGAAAGGGGAGCTCCTGGATTCCGAGGACCTGCTGGACCCCCAGGCCTTGCAGGAGAAAAGGGTCCCGCTGGGGAGCGTGGTGGCCCAGGCCCTGCAGGACCCAGAGGAGGGGCTGGAGAACCTGGCCGAGATGGTGCCCCTGGAACTCCGGGAATGAGGGGTGCTCCTGGAAGCCCCGGAGGACCAGGCAATGATGGCAAACCAGGGCCTCCCGGAAGTCAAGGAGAAAGTGGTCGCCCTGGGCCTCCTGGGCCATCTGGTCCTCGAGGTCAGCCTGGTGTCATGGGTTTCCCTGGTCCTAAAGGAAATGATGGTGCTCCTGGGAAGAATGGAGAACGAGGTGGCCCTGGAGGGCCTGGACTTCCAGGTCCTTCTGGAAAGAATGGTGAAACTGGACCTCAGGGTCCCCCGGGCCCTACTGGGCCATCTGGTGACAAAGGAGATTCAGGACCACCTGGTCCCCAAGGATTACAGGGCTTGCCTGGTACTGCTGGCCCTCCAGGAGAAAATGGAAAACCCGGTGAAGCAGGTCCCAAGGGTGATGTTGGTTCGCCTGGAACTCCCGGAGGCAAGGGTGATGCTGGTGCCCCCGGTGAACGTGGACCCCCTGGATTGGCAGGGACCCCAGGTCTTAGGGGAGGAGCGGGTCCCCCTGGCCCCGAAGGAGGAAAGGGCCCCGCTGGTCCCCCTGGGCCACCCGGCGCTTCTGGTAGTCCTGGTCTGCAAGGCATGCCTGGAGAAAGAGGAGGCCCTGGAGGTCCTGGTCCAAAAGGTGAAAAGGGTGAACCAGGCGGCGCTGGTGTGGACGGCGCCCCCGGGAAAGACGGCCCACGGGGTCCTACAGGTCCTATTGGTCCTCCTGGGCCAGCTGGTCAGCCTGGAGATAAGGGTGAAGGTGGTGCTCCTGGACTTCCAGGTATAGCTGGACCTCGTGGTGGCCCTGGTGAAAGAGGTGAACATGGGCCCCCAGGACCTGCTGGTTTCCCTGGCGCTCCTGGACAGAACGGCGAGCCTGGGGCTAAGGGAGAAAGAGGTGCCCCTGGTGAGAAAGGAGAAGGTGGAGCTCCCGGAATTGCTGGACCCCCTGGTGGTTCTGGCCCTGCGGGTCCTCCTGGTCCCCAAGGTGTCAAAGGTGAACGTGGCAGTCCTGGTGGTCCTGGTGCTGCTGGCTTTCCTGGTGCACGTGGTCTTCCTGGTCCTCCTGGCAGTAACGGGAACCCAGGACCCCCTGGTGCGAGTGGTGCTCCAGGCAAGGATGGGCCCCCAGGTCCCGCAGGGAACAGCGGTTCTCCTGGAAGTCCCGGGGTGTCTGGACCAAAAGGCGATGCTGGTCAACCAGGAGAGAAGGGGCCTCCCGGCGCTCAAGGCCCTCCAGGAGCCCCGGGCCCACTCGGACTTGCAGGGATCACTGGAGCACGGGGTCTTGCTGGACCACCAGGCATGCCAGGTCCTCGGGGAAGCCCCGGGCCTCAGGGCATCAAGGGTGAAAGTGGGAAGCCAGGAACCAGTGGCCACAATGGCGAACGTGGACCTCCTGGACCACAGGGTCTCCCTGGTCTGGCTGGTACTGCTGGTGAACCTGGAAGAGACGGAAACCCTGGATCAGATGGTCAGCCAGGCCGAGATGGATCTCCTGGTGGCAAGGGTGATCGAGGTGAAAATGGCTCTCCTGGGGCCCCGGGTGCACCTGGTCATCCAGGCCCCCCTGGTCCTGTGGGTCCAGCTGGAAAGAGTGGTGACAGAGGAGAAACGGGCCCTGCTGGTCCTGCTGGTTCTCCTGGTCCTGCTGGTGTCCGAGGTGCTCCTGGTCCTCAAGGCCCACGTGGTGACAAAGGTGAAACTGGTGAACGTGGGTCTAATGGCATCAAAGGACATCGAGGGTTCCCTGGCAATCCAGGCCCCCCAGGCTCTCCAGGTGCTGCTGGTCACCAGGGTGCTGTTGGTAGTCCAGGACCTGCTGGTCCCCGAGGACCTGTTGGACCCAGCGGACCTCCTGGCAAAGATGGAACAAGTGGACATCCTGGTCCCATTGGGCCACCCGGGCCTCGAGGCAACAAAGGCGAACGGGGGTCTGAGGGTTCCCCAGGCCATCCAGGGCAACCTGGTCCTCCTGGACCCCCTGGTGCCCCTGGTCCTTGCTGTGGTGGTGGTGCTGCCATCTCTGGGATTGGAGGTGGTGAAAAATCTGCTCTTGGTTTTGTACCATATTATGGAGATGAACCAATGGATTTTAAAATCAACACTGAAGAGATAATGTCTTCACTCAAATCTGTTAATGGACAAATAGAAAGCCTCATTAGTCCTGATGGTTCCCACAAAAACCCTGCTAGGAACTGCAGAGACCTGAAAATGTGCCACCCTGAACTCAAGAGTGGAGAATATTGGGTTGATCCTAACCAAGGCTGTAAGATGGACGCTATCAAAGTATTCTGTAATATGGAAACTGGGGAAACATGCCTAAGTGCCAGTCCTTCTTCCATTCCACTGAAAAACTGGTGGAGAGATTCTGGTGCTGAGAAGAAACATGTTTGGTTTGGAGAGTCCATGGATGGTGGTTTTCAGTTTAGCTATGGCAATCCTGAACTTCCTGAAGATGTGCTCGAGGTCCAGTTGGCACACCTCCGACTTCTCTCCAGCCGGGCCTCCCAGAACATCACATACCACTGCAAGAATAGCATCGCATACATGGATCAGGCCAGTGGGAATGTAAAGAAAGCCCTGAAGTTTATGGGGTCAAATGAAGGTGAATTCAAGGCTGAAGGAAACAGCAAATTCACATACACAGTTCTAGAAGATGGCTGCACTAAACACACTGGGGAATGGAGCAAAACAGTCTTTGAATACCGAACACGCAAGGCCATGAGACTGCCGATTATAGATATTTCACCCTATGATATTGGTGGTCCTGATCAAGAATTCGGTGTGGACGTTGGCCCTGTTTGCTTTTTATAA

Related Sequences

XP_004872361.1 Protein

Col3a1 PREDICTED: collagen alpha-1(III) chain [Heterocephalus glaber]

Length: 1465 aa      View alignments
>XP_004872361.1
MMSFVQKGTWLLLALLHPTVILAQQTPEVDEGGCTYLGQSYAARDVWKPEPCQICVCDSGSVLCDDIICDEENLDCPNPEIPFGECCAACPQPSTPAPVPSGRGPQGPKGDPGPPGIPGRNGDPGTPGQPGSPGPPGTPGICQSCPTGTQNYSPQFDSYDVKSGVGGVSGYPGPAGPPGPPGPPGTSGHPGAPGSPGYQGPPGEPGQAGPAGPPGPAGAIGPVGPAGKDGESGRPGRTGERGLPGPPGIKGPAGMPGFPGVKGHRGFDGRNGEKGETGAPGLKGENGLPGENGAPGPMGPRGAPGERGRPGLPGAAGTRGNDGARGSDGQPGPPGPPGTAGFPGSPGAKGEVGPAGSPGSSGAPGARGEPGPQGHAGAQGPPGPPGNNGSPGGKGEMGPAGIPGAPGLMGARGPAGPPGTNGAPGQRGSPGEPGKNGAKGEPGARGERGEAGSPGIPGTKGEDGKDGSPGEPGANGVPGAAGERGAPGFRGPAGPPGLAGEKGPAGERGGPGPAGPRGGAGEPGRDGAPGTPGMRGAPGSPGGPGNDGKPGPPGSQGESGRPGPPGPSGPRGQPGVMGFPGPKGNDGAPGKNGERGGPGGPGLPGPSGKNGETGPQGPPGPTGPSGDKGDSGPPGPQGLQGLPGTAGPPGENGKPGEAGPKGDVGSPGTPGGKGDAGAPGERGPPGLAGTPGLRGGAGPPGPEGGKGPAGPPGPPGASGSPGLQGMPGERGGPGGPGPKGEKGEPGGAGVDGAPGKDGPRGPTGPIGPPGPAGQPGDKGEGGAPGLPGIAGPRGGPGERGEHGPPGPAGFPGAPGQNGEPGAKGERGAPGEKGEGGAPGIAGPPGGSGPAGPPGPQGVKGERGSPGGPGAAGFPGARGLPGPPGSNGNPGPPGASGAPGKDGPPGPAGNSGSPGSPGVSGPKGDAGQPGEKGPPGAQGPPGAPGPLGLAGITGARGLAGPPGMPGPRGSPGPQGIKGESGKPGTSGHNGERGPPGPQGLPGLAGTAGEPGRDGNPGSDGQPGRDGSPGGKGDRGENGSPGAPGAPGHPGPPGPVGPAGKSGDRGETGPAGPAGSPGPAGVRGAPGPQGPRGDKGETGERGSNGIKGHRGFPGNPGPPGSPGAAGHQGAVGSPGPAGPRGPVGPSGPPGKDGTSGHPGPIGPPGPRGNKGERGSEGSPGHPGQPGPPGPPGAPGPCCGGGAAISGIGGGEKSALGFVPYYGDEPMDFKINTEEIMSSLKSVNGQIESLISPDGSHKNPARNCRDLKMCHPELKSGEYWVDPNQGCKMDAIKVFCNMETGETCLSASPSSIPLKNWWRDSGAEKKHVWFGESMDGGFQFSYGNPELPEDVLEVQLAHLRLLSSRASQNITYHCKNSIAYMDQASGNVKKALKFMGSNEGEFKAEGNSKFTYTVLEDGCTKHTGEWSKTVFEYRTRKAMRLPIIDISPYDIGGPDQEFGVDVGPVCFL