Details from NCBI annotation

Gene Symbol Lsm5
Gene Name LSM5 homolog, U6 small nuclear RNA associated (S. cerevisiae), transcript variant X1
Entrez Gene ID 101720314

Database interlinks

Part of NW_004624896.1 (Scaffold)

For more information consult the page for NW_004624896.1 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible homologs of the naked mole-rat gene and compared to it.

LSM5 ENSCPOG00000010421 (Guinea pig)

Gene Details

LSM5 homolog, U6 small nuclear RNA associated (S. cerevisiae)

External Links

Gene Match (Ensembl Protein ID: ENSCPOP00000009357, Guinea pig)

Protein Percentage 100.0%
CDS Percentage 94.51%
Ka/Ks Ratio 0.001 (Ka = 0.0002, Ks = 0.2254)

LSM5 ENSG00000106355 (Human)

Gene Details

LSM5 homolog, U6 small nuclear RNA associated (S. cerevisiae)

External Links

Gene Match (Ensembl Protein ID: ENSP00000410758, Human)

Protein Percentage 100.0%
CDS Percentage 93.41%
Ka/Ks Ratio 0.001 (Ka = 0.0003, Ks = 0.301)

Lsm5 ENSMUSG00000091625 (Mouse)

Gene Details

LSM5 homolog, U6 small nuclear RNA associated (S. cerevisiae)

External Links

Gene Match (Ensembl Protein ID: ENSMUSP00000126565, Mouse)

Protein Percentage 100.0%
CDS Percentage 89.01%
Ka/Ks Ratio 0.001 (Ka = 0.0007, Ks = 0.6919)

Lsm5 ENSRNOG00000042126 (Rat)

Gene Details

LSM5 homolog, U6 small nuclear RNA associated (S. cerevisiae) (Lsm5), mRNA

External Links

Gene Match (Ensembl Protein ID: ENSRNOP00000062832, Rat)

Protein Percentage 100.0%
CDS Percentage 90.48%
Ka/Ks Ratio 0.001 (Ka = 0.0005, Ks = 0.5366)

Genome Location

Sequence Coding sequence

Length: 276 bp    Location: 3079196..3083427   Strand: +
>XM_004872209.1
ATGGCGGCCAACGCGACCACCAACCCGTCTCAGCTGCTGCCGCTAGAACTCGTGGACAAGTGTATAGGATCAAGAATTCACATTGTGATGAAAAGTGATAAGGAAATTGTTGGCACTCTTCTAGGATTTGATGACTTTGTCAATATGGTGCTGGAAGATGTCACTGAGTTTGAGATCACACCAGAAGGAAGAAGGATTACTAAATTAGATCAGATCTTGCTAAATGGAAATAATATAACCATGCTGGTTCCTGGAGGAGAAGGACCCGAAGTATGA

Related Sequences

XP_004872266.1 Protein

Lsm5 PREDICTED: U6 snRNA-associated Sm-like protein LSm5 isoform X1 [Heterocephalus glaber]

Length: 91 aa      View alignments
>XP_004872266.1
MAANATTNPSQLLPLELVDKCIGSRIHIVMKSDKEIVGTLLGFDDFVNMVLEDVTEFEITPEGRRITKLDQILLNGNNITMLVPGGEGPEV