Sequence details NCBI ID: XM_004872093.1 (Coding sequence)   Best Hit

Details from NCBI annotation

Gene Symbol Psma4
Gene Name proteasome (prosome, macropain) subunit, alpha type, 4, transcript variant X2
Entrez Gene ID 101701639

Database interlinks

Part of NW_004624894.1 (Scaffold)

For more information consult the page for NW_004624894.1 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible homologs of the naked mole-rat gene and compared to it.

PSMA4 ENSCPOG00000019698 (Guinea pig)

Gene Details

proteasome (prosome, macropain) subunit, alpha type, 4

External Links

Gene Match (Ensembl Protein ID: ENSCPOP00000018331, Guinea pig)

Protein Percentage 99.23%
CDS Percentage 95.66%
Ka/Ks Ratio 0.03191 (Ka = 0.0054, Ks = 0.1681)

PSMA4 ENSG00000041357 (Human)

Gene Details

proteasome (prosome, macropain) subunit, alpha type, 4

External Links

Gene Match (Ensembl Protein ID: ENSP00000044462, Human)

Protein Percentage 100.0%
CDS Percentage 93.61%
Ka/Ks Ratio 0.001 (Ka = 0.0003, Ks = 0.3022)

Psma4 ENSMUSG00000032301 (Mouse)

Gene Details

proteasome (prosome, macropain) subunit, alpha type 4

External Links

Gene Match (Ensembl Protein ID: ENSMUSP00000034848, Mouse)

Protein Percentage 98.85%
CDS Percentage 91.57%
Ka/Ks Ratio 0.01207 (Ka = 0.0052, Ks = 0.4311)

Psma4 ENSRNOG00000013493 (Rat)

Gene Details

proteasome (prosome, macropain) subunit, alpha type 4 (Psma4), mRNA

External Links

Gene Match (Ensembl Protein ID: ENSRNOP00000018173, Rat)

Protein Percentage 99.23%
CDS Percentage 91.44%
Ka/Ks Ratio 0.00736 (Ka = 0.0034, Ks = 0.4659)

Genome Location

Sequence Coding sequence

Length: 786 bp    Location: 2418230..2411693   Strand: -
Raw sequence   
>XM_004872093.1
ATGTCTCGAAGATATGACTCCAGGACCACTATATTTTCTCCAGAAGGTCGCTTATACCAAGTTGAATATGCCATGGAAGCCATTGGACATGCAGGCACCTGTTTGGGAATTTTAGCAAACGATGGTGTTTTGCTTGCAGCAGAGAGACGCAACATTCACAAGCTTCTTGATGAAGTCTTTTTCTCTGAAAAAATTTATAAACTCAATGAGGACATGGCTTGCAGCGTGGCAGGTATAACTTCTGATGCTAATGTTCTGACTAATGAACTGAGGCTCATTGCACAAAGGTATTTATTACAATATCAGGAGCCAATTCCATGTGAGCAGTTGGTTACAGCACTGTGTGATATCAAACAGGCCTATACACAATTTGGAGGAAAGCGTCCCTTTGGTGTCTCGTTGCTGTACATTGGCTGGGATAAGCACTATGGCTTTCAGCTCTATCAGAGTGACCCCAGTGGAAATTATGGGGGCTGGAAAGCCACATGCATTGGAAATAACAGTGCTGCAGCTGTGTCAATGTTGAAACAGGACTACAAAGAAGGAGAAATGACTCTGAAGTCGGCGCTTGCTTTAGCTATCAAAGTGCTGAACAAGACCATGGACGTTAGTAAGCTGTCTGCTGAGAAAGTGGAAATCGCCACATTAACCAGAGAGAATGGGAAGACGGTGATAAGAGTTCTCAAGCAAAAGGAAGTGGAACAGTTGATCAAGAAACATGAGGAAGAAGAAGCTAAAGCTGAGCGTGAGAAGAAAGAAAAAGAACAGAAAGAAAAAGATAAATAG

Related Sequences

XP_004872150.1 Protein

Psma4 PREDICTED: proteasome subunit alpha type-4 isoform X2 [Heterocephalus glaber]

Length: 261 aa      View alignments
>XP_004872150.1
MSRRYDSRTTIFSPEGRLYQVEYAMEAIGHAGTCLGILANDGVLLAAERRNIHKLLDEVFFSEKIYKLNEDMACSVAGITSDANVLTNELRLIAQRYLLQYQEPIPCEQLVTALCDIKQAYTQFGGKRPFGVSLLYIGWDKHYGFQLYQSDPSGNYGGWKATCIGNNSAAAVSMLKQDYKEGEMTLKSALALAIKVLNKTMDVSKLSAEKVEIATLTRENGKTVIRVLKQKEVEQLIKKHEEEEAKAEREKKEKEQKEKDK