Details from NCBI annotation

Gene Symbol Lingo1
Gene Name leucine rich repeat and Ig domain containing 1, transcript variant X3
Entrez Gene ID 101721017

Database interlinks

Part of NW_004624894.1 (Scaffold)

For more information consult the page for NW_004624894.1 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible homologs of the naked mole-rat gene and compared to it.

LINGO1 ENSCPOG00000002081 (Guinea pig)

Gene Details

leucine rich repeat and Ig domain containing 1

External Links

Gene Match (Ensembl Protein ID: ENSCPOP00000001884, Guinea pig)

Protein Percentage 99.51%
CDS Percentage 94.52%
Ka/Ks Ratio 0.00292 (Ka = 0.0019, Ks = 0.6636)

LINGO1 ENSG00000169783 (Human)

Gene Details

leucine rich repeat and Ig domain containing 1

External Links

Gene Match (Ensembl Protein ID: ENSP00000347451, Human)

Protein Percentage 99.35%
CDS Percentage 93.59%
Ka/Ks Ratio 0.00297 (Ka = 0.0026, Ks = 0.8654)

Lingo1 ENSMUSG00000049556 (Mouse)

Gene Details

leucine rich repeat and Ig domain containing 1

External Links

Gene Match (Ensembl Protein ID: ENSMUSP00000059050, Mouse)

Protein Percentage 99.35%
CDS Percentage 91.15%
Ka/Ks Ratio 0.00253 (Ka = 0.0027, Ks = 1.0547)

Lingo1 ENSRNOG00000017193 (Rat)

Gene Details

leucine rich repeat and Ig domain containing 1 (Lingo1), mRNA

External Links

Gene Match (Ensembl Protein ID: ENSRNOP00000023084, Rat)

Protein Percentage 99.35%
CDS Percentage 91.04%
Ka/Ks Ratio 0.00227 (Ka = 0.0027, Ks = 1.1752)

Genome Location

Sequence Coding sequence

Length: 1845 bp    Location: 732673..791168   Strand: +
>XM_004872061.1
ATGCTGGCGGGGGGCGTGAGGAGCGTGCCCAGCCCCCTCCTGGCCTGCTGGCAGCCTATCCTCCTGCTGGTGCTGGGCTCTGTGCTGTCCGGCTCGGCCACAGGCTGCCCACCGCGCTGCGAGTGCTCTGCTCAGGACCGTGCTGTGCTCTGCCACCGAAAGCGCTTCGTGGCAGTGCCCGAGGGCATCCCCACTGAGACACGCCTGCTCGACCTGGGCAAGAATCGCATCAAGACACTCAACCAGGACGAGTTCGCCAGCTTCCCGCACCTGGAGGAGCTGGAGCTCAATGAGAACATTGTGAGCGCCGTGGAGCCTGGCGCCTTCAACAACCTCTTCAACCTGCGGACGCTGGGGCTTCGCAGCAACCGCCTGAAGCTTATCCCCTTGGGTGTCTTCACTGGCCTCAGCAACCTGACCAAGCTGGACATCAGCGAGAACAAGATCGTCATCCTGCTGGACTACATGTTCCAGGATCTGTACAACCTCAAGTCGTTGGAGGTTGGTGACAACGACCTCGTCTACATCTCCCACCGCGCCTTCAGCGGCCTCAACAGCCTGGAGCAGCTGACGCTGGAGAAATGCAACCTGACCTCCATCCCCACCGAGGCGCTGTCCCACCTGCACGGGCTCATTGTGCTGAGGCTGCGGCACCTCAACATCAATGCCATCCGGGACTACTCCTTCAAGAGGCTGTACCGGCTCAAGGTCCTGGAGATCTCCCACTGGCCTTACCTGGACACCATGACCCCCAACTGCCTCTACGGCCTCAACCTGACGTCCCTGTCCATCACGCACTGCAACCTGACTGCCGTGCCCTACCTGGCCGTGCGCCACCTGGTCTACCTGCGCTTCCTCAACCTCTCCTACAACCCCATCGGCACCATTGAGGGCTCCATGCTGCATGACCTCCTGAGGCTGCAGGAGATCCAGCTGGTGGGCGGGCAGCTGGCCGTGGTGGAGCCCTATGCCTTCCGCGGCCTCAACTACCTGCGTGTACTCAATGTGTCGGGCAACCAGCTGACCACGCTGGAGGAGTCGGCCTTCCACTCGGTGGGCAACCTGGAGACGCTCATCCTGGACTCCAACCCGCTGGCCTGCGACTGCCGGCTCCTGTGGGTCTTCCGTCGCCGCTGGCGGCTCAACTTCAACCGGCAGCAGCCCACGTGTGCCACACCCGAATTCGTGCAGGGCAAGGAGTTCAAGGACTTCCCTGATGTGCTCCTCCCCAACTACTTCACCTGCCGCCGTGCCCGCATCCGGGACCGCAAGGCCCAGCAGGTGTTCGTGGACGAGGGTCATACAGTGCAGTTTGTGTGCCGGGCGGATGGTGACCCACCGCCTGCCATCCTCTGGCTCTCACCCCGCAAGCACCTGGTCTCGGCCAAGAGCAACGGGCGGCTCACGGTCTTCCCTGACGGCACGCTGGAGGTGCGCTACGCCCAGGTCCAGGACAACGGCACGTACCTGTGCATCGCGGCCAACGCGGGCGGCAACGACTCCATGCCCGCCCACCTGCACGTGCGCAGCTACTCACCCGACTGGCCACATCAGCCCAACAAGACCTTCGCCTTCATCTCCAACCAGCCAGGCGAGGGAGAGGCCAACAGCACCCGTGCCACCGTGCCTTTCCCCTTTGACATCAAGACCCTCATCATCGCCACCACCATGGGCTTCATCTCCTTCCTGGGCGTCGTGCTCTTCTGCCTGGTGCTGCTGTTTCTCTGGAGCCGGGGCAAAGGCAACACCAAGCACAACATTGAGATTGAGTACGTACCCCGCAAGTCGGACGCGGGCATCAGCTCAGCCGACGCGCCCCGCAAGTTCAACATGAAGATGATCTGA

Related Sequences

XP_004872118.1 Protein

Lingo1 PREDICTED: leucine-rich repeat and immunoglobulin-like domain-containing nogo receptor-interacting protein 1 isoform X3 [Heterocephalus glaber]

Length: 614 aa      View alignments
>XP_004872118.1
MLAGGVRSVPSPLLACWQPILLLVLGSVLSGSATGCPPRCECSAQDRAVLCHRKRFVAVPEGIPTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPIGTIEGSMLHDLLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESAFHSVGNLETLILDSNPLACDCRLLWVFRRRWRLNFNRQQPTCATPEFVQGKEFKDFPDVLLPNYFTCRRARIRDRKAQQVFVDEGHTVQFVCRADGDPPPAILWLSPRKHLVSAKSNGRLTVFPDGTLEVRYAQVQDNGTYLCIAANAGGNDSMPAHLHVRSYSPDWPHQPNKTFAFISNQPGEGEANSTRATVPFPFDIKTLIIATTMGFISFLGVVLFCLVLLFLWSRGKGNTKHNIEIEYVPRKSDAGISSADAPRKFNMKMI