Sequence details NCBI ID: XM_004872058.1 (Coding sequence)   Best Hit

Details from NCBI annotation

Gene Symbol Cspg4
Gene Name chondroitin sulfate proteoglycan 4
Entrez Gene ID 101720313

Database interlinks

Part of NW_004624894.1 (Scaffold)

For more information consult the page for NW_004624894.1 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible homologs of the naked mole-rat gene and compared to it.

CSPG4 ENSCPOG00000012020 (Guinea pig)

Gene Details

chondroitin sulfate proteoglycan 4

External Links

Gene Match (Ensembl Protein ID: ENSCPOP00000010815, Guinea pig)

Protein Percentage 86.0%
CDS Percentage 86.17%
Ka/Ks Ratio 0.14054 (Ka = 0.0766, Ks = 0.5449)

CSPG4 ENSG00000173546 (Human)

Gene Details

chondroitin sulfate proteoglycan 4

External Links

Gene Match (Ensembl Protein ID: ENSP00000312506, Human)

Protein Percentage 83.1%
CDS Percentage 83.19%
Ka/Ks Ratio 0.12183 (Ka = 0.0938, Ks = 0.7695)

Cspg4 ENSMUSG00000032911 (Mouse)

Gene Details

chondroitin sulfate proteoglycan 4

External Links

Gene Match (Ensembl Protein ID: ENSMUSP00000038909, Mouse)

Protein Percentage 80.35%
CDS Percentage 79.62%
Ka/Ks Ratio 0.1164 (Ka = 0.1158, Ks = 0.995)

Cspg4 ENSRNOG00000017208 (Rat)

Gene Details

chondroitin sulfate proteoglycan 4 (Cspg4), mRNA

External Links

Gene Match (Ensembl Protein ID: ENSRNOP00000023326, Rat)

Protein Percentage 79.84%
CDS Percentage 79.32%
Ka/Ks Ratio 0.12653 (Ka = 0.1212, Ks = 0.9582)

Genome Location

Sequence Coding sequence

Length: 6966 bp    Location: 594878..564562   Strand: -
Raw sequence   
>XM_004872058.1
ATGCACCCCAGCCCGTGGGCCCCGCGCTCTGTGCCCGCCCTGGCCTTGGCTCTCACTTGGGCGCTGCTGGCTGGACCCGCATCTGCAGCCTCCTTCTTTGGTGAGAGCCACCTGGAGGCGCCTGTGGCCACGGCCCTGGCTGACATCAACCTGCAGCTGCAGTTCTCCACGGCCCAGCCCGAGGCCCTGCTCCTCCTGGCAGCTGGAGAGGACGACCACCTGCTGCTGCAGCTCCATGAGGGGCGCCTCCAGGTCAGACTCGTCCTGGGCCAGGAGGAGCTGAGGCTGCAGACTCAGGCAGAGGTCCTGCTGGGCGACTCTGTCCCCCACACCATGGCACTCACTGTCTCAGACGGCTGGGCTGTGCTGTCAGTCGATGGGGTTCTCAACTCCTCCGCCCTGGTCCCAGGAGGCCCCCTCAATGTCCCCTATGGGCTCTTTGTCGGGGGCTCTGGGAGCCTGAGCCTGCCCTACCTGAGAGGGGCCAGTAGGCCCCTGCGGGGCTGTCTCCTCACTGCCACCCTCAACGGCCGTAGCCTCCTCCGCCCGCTGACCCCCGACGTGCCAGAGGGCTGCGCCGAAGAGTTCTCAGCTGGGGACGACGTGGCCCTGGGCTTCTCTGGGCCCCACTCACTGGCGGCCTTCCCAGCCTGGAGCACTCAGGACAAGGGCACCCTGGAGTTCACGCTTACCACGAGGACCCAGCATGCGCCCCTGGCCTTCCAGGCGGGAGGCCGGCGTGGGGACTTCATCTATGTGGACATATTCGAGGGCCACCTGCGAGCTGTTCTCGAGAAGGGCCAGGGCACCATCTTGCTCCACAACAGTGTCCCCGTGGCCGATGGGCAGCCCCATGAGGTCAGCATCCACATGGACACCCACCGCCTGGAGATCTCCGTGGACCAGTACCCCACACGCACCTCCAACCGCGGGGTCCTCAGCTACCTGGAGCCACGTGGCAGCCTCCTCCTTGGGGGCCTGGACGCGGAGGCCGCCCAACACCTCCAGGAACACCGCCTGGGCCTGGCTCCGGGCACTGCCAACGCCTCCTTGCTGGGCTGCCTAGAAGACCTGACCGTCAATGGCCAGCGGCAGGGGCTCCGCCATGCTGTGCTGACTCGTGGACTGGCAGTCGGCTGCAGGCTGGAGGAAGATGAGTACGAGGACGATGCCTATGGGTCCTATGAGGCACTGTCCACCCAGGCACCTGAGGCATGGCCAGCTGTGGAGCTGCCTGAGCCATGCGTCCCTGAACCTGGGCTGCCCCCTGTCTTCACCAACCTCACCCAGCTGCTGACCATCAGCCCCCTAGTGGTGGCGGAGGGTGGCACAGCCTGGCTGGAGTGGCAGCACGTGCAGCCCACACTGGACCTGCAGGAGGCGGAGCTGCGCAAGTCCCAGGTGCTGTTCAGCGTGAGCAGGGGTGCGCGGCACGGCGAACTGGCGCTGGACATCCCGGGCGCCCGGACTCGGCAGATGTTCACTCTGCTGGATGTGGTCAACCATAAGGTCCGCTTTGTCCATGACGGCTCCGAGGACCCCTCCGACCAGCTGGTGCTGGAAGTGACAGTGACAGCACGGGTACCCATGCCCTCCTGCCTGCGGCGGGGCCAGACATACCTGCTACCCGTGCAAGTCAACCCCACCAACGACCCGCCCCGTGTCATCTTCCCACACGGCAGCCTCATGGTGATTCTGGAGCACACACAGAAGCCGCTGGGGCCTGAGGTTTTCCAGGCCTATGACCCAGACTCTGCCTGCGAAAGCCTCACCTTCCAGCTCCTGGGAGACTTAGCGGGGCTCCCCCTGGAGCACCGAGACCGCCCAGGGGAGCCAGCGCCTGAGTTTTCCTGCCGAGAGCTGGAGGTAGGCAACATTGTCTACGTCCACCGAGGCGGCCCTGCGCAGGCCCTGACATTCCGGGTGAGCGATGGGCTACAGGCCAGTGCCCCGGCCACACTGAAGGTGGTGGCTGTTCGGCCAGCCATCCGGATCCGCCACAGCACGGGGATGCGCCTGGCACAGGGCTCTGCTGCACCCATCTTGCCCGCCAACCTGTCTGTGGAGACCAATGCTGTGGGACAGGACGTGAGTGTGTTGTTCCGAATCGTGGGCACCCTACAGTTTGGGGAGCTGCAGAAGCAGGGGGCAGGTGGTGCGGAGGGCGCTGAGTGGTGGCCCACCCAGGCCTTCCACCAGCAGGACGTGGAGCAGGGCCGCGTGCGGTACCTGAGCACTGACCCACAGCACCGTGCCCAGGATGCTGTGGAGAACCTGGTGCTGGAGGTACAAGTGGGTCAGGAGACCCTGAGCAACCTCTCCTTCCCAGTGACCGTCCAGAGGGCCACTGTGTGGATGCTGCGGCTGGAGCCCCTGCACACGCAGACCACGCAGCCAGAGGCCCTCACCGCAGCCCACCTGGAGGCTGCCATGGAAGAGGCGGCCAACCTGAGCCCCAGTAGCTTCCACTATGAGGTGGTCCAGGCCCCCAGGAAAGGGAACCTGCAGCTGCGGGGCGTGAGGGTGTCAGCTGGCCAGGGCTTCAGCCAGGAGGCCCTGCGGGCGGGGCATGTGACCTATGCGGCCACCTCACGCACTTCCAAGGCCATGGAGGACAGCTTCCGCTTCCGTGTCAGAGCACCGCCGCACTTCTCGCCACTCTACACCTTCCCTATCCACATCGGTGGTGACCCGGATGCTCCCGTCCTCACCAACGTCCTCCTCCTGGTGCCCGAGGGGGGTGAGGCTGTCCTCTCCACTGACCACCTCTTCGTCAAGAGCCTCAACAGCACAAGCTACCTCTATGAGGTCATGGAGCGGCCCCGCCATGGGCGACTGGCATGGCGGGGGCCTAAGGACAAGGCCACTGTGGTGACGTCCTTCACCAACGAAGACCTGTTGCTTGGCCGGCTGCTCTACCAGCACGATGACTCTGAGACCACTGAAGATGACATTCCGTTTGTGGCCACCCGCCAGGGCGAGGGCAGTGGCGATGCGGCCTGGGAGGAAGTCCGAGGTGTCTTCCGGGTGGCCATCCAGCCGGTGAATGACCACGCCCCCGTGCAGACTGTCAGCCACGTGTTCCATGTGGCCCGGGGTGGGCAGCGGCTGCTAACAACAGAGGATGTGGCCTTTAGCGACGCAGACTCCGGCTTCTCCGACACACAGTTGGTGCTGACCCGCAAGGACCTCCTGTTCGGCAGCATCGTGGCCGTGGAGGAGCCCACGCGGCCCATCTACCGCTTCACCCAGGAAGACCTAAGGAGGCGGCGGGTCCTGTTTGTGCACTCAGGGGCCGACCACGGCTGGCTGCAGCTGCAGGTGTCCGATGGGCAGCACCAGGCCACCGCCATGCTGGAGGTGCAGGCCTCAGAGCCCTTCCTCCGTGTGGCTAACAGCTCCAGCCTTGTGGTCCCTCAGGGAGGTCAGGGCACCATTGACACCACTGTGCTCCCTCTGGACACCAACCTGGACATCCGCAGTGGGGATGAGGTCCACTACCGCATCACAGGTGGCCCTCGCTGGGGGCAGCTGCTCCGCGCTGGTCAGCCGGCCACCACCTTTTCCCAACAGGACCTGCTGGATGGCACCGTCCTCTACAGCCACAACGGCAGCCTCAGCCCCCGAGACACGCTGGGCCTCTCTGTGGAAGCAGGACCGGTGAGCACAGAAGCTACCCTCCAAGTGACCATCGCCCTCGACAGCCCACCGGCCCCACTGCAACTGATCCAGCATGAGAAGATCTATGTCTTCCAGGGGGAGGCGGCTGAGATCAGACGAGACCACCTGGAGGTAGACCAGGAGGGGGTTCCCCCCGCAGACATCGCGTTCTCAGTGAGGAGCCCCCCGAGCGCGGGCTACCTGGTGATGATGTCCCATGCGGCGGCCGGGCCGCCCAGCCTGACCCCTGTGCACAGCTTCTCCCAGGAGGCGGTGACTGCAGCCAGGGTCCTCTACCTGCACTCCCGCCCCGGAGCCTGGAGTGACACCTTCGCCCTGGATGCGTCCTCAGGCCTGGGTGCCCCCCTGGAGGGCATCCGCGTGGAGGTGGAGGTGCTGCCTGCCGCTATCCCCCTGGAGGGGCAGAACTTTAGTGTCCCCGAGGGTGGCGCCCGCACCCTGGCCCCGCCGCTGCTCCAAGTCGCGGGGCCCTACTTCCCCACCCTGCCCGGCCTCGACCTGCGGGTACTGGAGCCCCCCAGGCACGGGGCCCTGCAGAGGGAGGAGCAGCCTGGACGCAGGACCCTCGACACCTTCTCCTGGAGAGAGGTGGAAGAGCAGCGGATCCAATACGTGCATGATGGGAGCGAGACTCTGACCGACAGCTTCGTTCTGGTGGCCAACGCCTCCGAGATGGGCCGCCAGAGCCAGCCAGTGACCTTCACCGTCACCATCCTGCCTGTTAATGACCAACCCCCTGTCCTCACCACAAACACGGGCCTGCAGCTGTGGGAGGGGACCACGGTGCCCATCCCCGCCGAGGCTTTGCGGGGCACAGATGGCGACTCCAAGCCCGAGGACCTGGTCTACACCATCGAGCAGCCCAGCAACGGACAGGTGGTGCTACGGGAGGCGCAGAGCACCGAGGTCCACAGCTTCACCCAGGCCCAGCTGGACAGTGGGCTGGTACTGTTCTCACACAGAGGAGCCCTGGACGGAGGCTTCCACTTCCACTTCTCTGATGGTGAGCACGTGTCCTCGGGCCACTTCTTCCGCGTGACAGCCCAGAAGCAGGTGCAGCTGTCACTGGAGGGCACCCACATGCTGAACGTCTGCCCAGAGTCCGTCCAGCCACTTGGCAGCCAAACCCTGAATGCCACCTCCAGCTCAGGCACCGACCCCCACCACCTGCTCTACCGCGTGCTTCGTGGTCCCCAGCTAGGCCGGCTGCTCCATACCCAGCAGGGAAGTGCCACTGAGGCCCTGGTCAACTTTACTCAGGCCGAGGTGTCTGCTGGGAATGTGCTGTATGAGCACGAGCTGTCCCCCGAGCCTTTCTGGGAAGCCCACGATGCTGTAGAGCTCCTGCTGTCCTCACCCCCAGCCCCCGACGTGGCTGCCACACTGGCTGTGGTTGTGTCATTTGAAGCTGCCTGTCCCCAGCGCCCCAGCCGCCTCTGGAGAAACAAAGGTCTGTGGGTCCCTGAGGGCCAGCGAGCCAAGATCACTGTGGCTGCCCTGGACGCCTCCAACCTCCTAGCCACCGTCCCTGCACCTCAGCGCCCCGAGCATGATGTGCTGTTCCAGGTGACGCAGTTCCCCACTCGGGGCCAGCTGCTGCTGTCTGAGGAGCCCCTCCACATGGGGAGACCCTACTTCTTGCAGAGCCAGCTGGCTGCAGGCCAGGTGGTGTATACCCACAGTGGCGGGGGCACCCAGCCGGATGGCTTCCGCTTCCGTGCTCATCTCCAGGGCCCAGCGGGGGCCTTCGTGGTGGGCCCCCAAACCGTAGAGGCCTTTGCCATCACTGTGCGGGATGTGAACGAGCGCCCACCCCAGCCACAGGCCTCAGTGGCACTCCGGCTCAAGCGGGGATCCCGTGTCCCTGTTGCCCGAGCCCAGTTGAGTGTGGTAGACCCAGACTCCAACCCTGGGGAGATCCAGTATGAGGTGCAGCGGGCTCCCCACAATGGCTTCCTGAGCCTGGTGGGGGGTACCCCAGGCCCTGTGACCCGATTCACACAGGCCGATGTGGATGCGGGGCGGCTGACCTTTGTGGCCAATGGCAGCAGCGTGCCAGGCATCTTCCAGCTAAGCGTGTCTGACGGGGCCAGCCCGCCCTTGCCTGTGTCCCTGGCTGTGGACATATTGCCATCTGCCCTTGAGGTGCAACTACAGGCCCCCCTGGAGGTGCCTCAGGCTGCAGGGCGGGCCTCACTGAGCCGGCAGCAGCTCTGGGTGGTCTCGGACCGGGAGGAACCAGACACGACCTACCGCCTCACCCAGGGGCCCCAGTATGGGCAGCTGCTGGTGGGCGGACAGCCCACCTCGGCCTTCAGCCAGCTGCAGGTAGACCGGGGGGAGGTGGTCTTCACTTTCACCAACTTCTCCTCCTCTCGTGACCACTTCCAAGTCCTGGCACAGGCCAGGGGTGCCAACGCGTCTGCCACGGTGAACATCACCGTAAGAGCCCTGCTGCATGCAGGAGCAGATGGCCCGTGGCCCCAGGGCACCACCCTGCGCCTGGACTCCACTGTGCTGGATGCCAGCGAGCTGGCCAACCACACGGGCAGCATGCCCCACTTCCGGCTCCTGGCGGGACCCTGGCATGGCCGTGTGGTACGTGTGCCCCGGGCCCGGACAGAGACCAAGAGCGAGCAGCCTGTGGACCAGTTCACCCAGCAGGACCTAGAGGCTGGGAGGCTGGGGCTGGAGGTGGGCAGGCCAGAGGGTCCGACACCCAGGCTTGCAGAGGACAGCCTCACTCTGGAGCTGTGGGCGAGGGGTGTACCACCCGCTATAGCCTCACTGGACTTTGCCACCGAGCCTTACGATGCAGCCCGGCCCTACAGTGTGGCACTGCTCAGTGTCCCTGAGGCTGCTCGGACGGAAGCTGGGAAGCCAGACAGCAACACCGCCAGGGGTGAGCCAGGCCCAGCGGCGTCCAGCCCAGTGCCCACTGTGGCCAAGGGTGGCTTCCTGGGCTTCCTGGAGGCCAACATGTTCAGCGTCATCGTCCCCGTGTGCCTGGTCCTGCTGCTCCTGGCGCTCATCCTGCCGCTGCTCTTCTACCTCCGCAAGCGAAACAAGACAGGCAAGCACGATGTCCAGATCTTGGCTGCCAAGCCCCGAAATGGCCTGGCTGGTGACACAGAGACCTTCCGCAAGGTGGAGCCGGGCCAGGCCATCCCGCTCACTGCAGTGCCTGGCCAGGGTCCCGTGCCCGGAGGCCAGCCAGACCCTGAGCTGCTGCAGTTCTGCCGGACACCCAACCCTGCCCTCAGGAATGGCCAGTACTGGGTGTGA

Related Sequences

XP_004872115.1 Protein

Cspg4 PREDICTED: chondroitin sulfate proteoglycan 4 [Heterocephalus glaber]

Length: 2321 aa      View alignments
>XP_004872115.1
MHPSPWAPRSVPALALALTWALLAGPASAASFFGESHLEAPVATALADINLQLQFSTAQPEALLLLAAGEDDHLLLQLHEGRLQVRLVLGQEELRLQTQAEVLLGDSVPHTMALTVSDGWAVLSVDGVLNSSALVPGGPLNVPYGLFVGGSGSLSLPYLRGASRPLRGCLLTATLNGRSLLRPLTPDVPEGCAEEFSAGDDVALGFSGPHSLAAFPAWSTQDKGTLEFTLTTRTQHAPLAFQAGGRRGDFIYVDIFEGHLRAVLEKGQGTILLHNSVPVADGQPHEVSIHMDTHRLEISVDQYPTRTSNRGVLSYLEPRGSLLLGGLDAEAAQHLQEHRLGLAPGTANASLLGCLEDLTVNGQRQGLRHAVLTRGLAVGCRLEEDEYEDDAYGSYEALSTQAPEAWPAVELPEPCVPEPGLPPVFTNLTQLLTISPLVVAEGGTAWLEWQHVQPTLDLQEAELRKSQVLFSVSRGARHGELALDIPGARTRQMFTLLDVVNHKVRFVHDGSEDPSDQLVLEVTVTARVPMPSCLRRGQTYLLPVQVNPTNDPPRVIFPHGSLMVILEHTQKPLGPEVFQAYDPDSACESLTFQLLGDLAGLPLEHRDRPGEPAPEFSCRELEVGNIVYVHRGGPAQALTFRVSDGLQASAPATLKVVAVRPAIRIRHSTGMRLAQGSAAPILPANLSVETNAVGQDVSVLFRIVGTLQFGELQKQGAGGAEGAEWWPTQAFHQQDVEQGRVRYLSTDPQHRAQDAVENLVLEVQVGQETLSNLSFPVTVQRATVWMLRLEPLHTQTTQPEALTAAHLEAAMEEAANLSPSSFHYEVVQAPRKGNLQLRGVRVSAGQGFSQEALRAGHVTYAATSRTSKAMEDSFRFRVRAPPHFSPLYTFPIHIGGDPDAPVLTNVLLLVPEGGEAVLSTDHLFVKSLNSTSYLYEVMERPRHGRLAWRGPKDKATVVTSFTNEDLLLGRLLYQHDDSETTEDDIPFVATRQGEGSGDAAWEEVRGVFRVAIQPVNDHAPVQTVSHVFHVARGGQRLLTTEDVAFSDADSGFSDTQLVLTRKDLLFGSIVAVEEPTRPIYRFTQEDLRRRRVLFVHSGADHGWLQLQVSDGQHQATAMLEVQASEPFLRVANSSSLVVPQGGQGTIDTTVLPLDTNLDIRSGDEVHYRITGGPRWGQLLRAGQPATTFSQQDLLDGTVLYSHNGSLSPRDTLGLSVEAGPVSTEATLQVTIALDSPPAPLQLIQHEKIYVFQGEAAEIRRDHLEVDQEGVPPADIAFSVRSPPSAGYLVMMSHAAAGPPSLTPVHSFSQEAVTAARVLYLHSRPGAWSDTFALDASSGLGAPLEGIRVEVEVLPAAIPLEGQNFSVPEGGARTLAPPLLQVAGPYFPTLPGLDLRVLEPPRHGALQREEQPGRRTLDTFSWREVEEQRIQYVHDGSETLTDSFVLVANASEMGRQSQPVTFTVTILPVNDQPPVLTTNTGLQLWEGTTVPIPAEALRGTDGDSKPEDLVYTIEQPSNGQVVLREAQSTEVHSFTQAQLDSGLVLFSHRGALDGGFHFHFSDGEHVSSGHFFRVTAQKQVQLSLEGTHMLNVCPESVQPLGSQTLNATSSSGTDPHHLLYRVLRGPQLGRLLHTQQGSATEALVNFTQAEVSAGNVLYEHELSPEPFWEAHDAVELLLSSPPAPDVAATLAVVVSFEAACPQRPSRLWRNKGLWVPEGQRAKITVAALDASNLLATVPAPQRPEHDVLFQVTQFPTRGQLLLSEEPLHMGRPYFLQSQLAAGQVVYTHSGGGTQPDGFRFRAHLQGPAGAFVVGPQTVEAFAITVRDVNERPPQPQASVALRLKRGSRVPVARAQLSVVDPDSNPGEIQYEVQRAPHNGFLSLVGGTPGPVTRFTQADVDAGRLTFVANGSSVPGIFQLSVSDGASPPLPVSLAVDILPSALEVQLQAPLEVPQAAGRASLSRQQLWVVSDREEPDTTYRLTQGPQYGQLLVGGQPTSAFSQLQVDRGEVVFTFTNFSSSRDHFQVLAQARGANASATVNITVRALLHAGADGPWPQGTTLRLDSTVLDASELANHTGSMPHFRLLAGPWHGRVVRVPRARTETKSEQPVDQFTQQDLEAGRLGLEVGRPEGPTPRLAEDSLTLELWARGVPPAIASLDFATEPYDAARPYSVALLSVPEAARTEAGKPDSNTARGEPGPAASSPVPTVAKGGFLGFLEANMFSVIVPVCLVLLLLALILPLLFYLRKRNKTGKHDVQILAAKPRNGLAGDTETFRKVEPGQAIPLTAVPGQGPVPGGQPDPELLQFCRTPNPALRNGQYWV