Sequence details NCBI ID: XM_004871887.1 (Coding sequence)   Best Hit

Details from NCBI annotation

Gene Symbol Ptprf
Gene Name protein tyrosine phosphatase, receptor type, F, transcript variant X12
Entrez Gene ID 101711685

Database interlinks

Part of NW_004624892.1 (Scaffold)

For more information consult the page for NW_004624892.1 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible homologs of the naked mole-rat gene and compared to it.

PTPRF ENSCPOG00000010338 (Guinea pig)

Gene Details

protein tyrosine phosphatase, receptor type, F

External Links

Gene Match (Ensembl Protein ID: ENSCPOP00000009285, Guinea pig)

Protein Percentage 96.73%
CDS Percentage 92.78%
Ka/Ks Ratio 0.05761 (Ka = 0.0167, Ks = 0.2896)

PTPRF ENSG00000142949 (Human)

Gene Details

protein tyrosine phosphatase, receptor type, F

External Links

Gene Match (Ensembl Protein ID: ENSP00000353030, Human)

Protein Percentage 95.44%
CDS Percentage 90.19%
Ka/Ks Ratio 0.04407 (Ka = 0.0223, Ks = 0.5068)

Ptprf ENSMUSG00000033295 (Mouse)

Gene Details

protein tyrosine phosphatase, receptor type, F

External Links

Gene Match (Ensembl Protein ID: ENSMUSP00000039368, Mouse)

Protein Percentage 94.94%
CDS Percentage 88.76%
Ka/Ks Ratio 0.04374 (Ka = 0.0249, Ks = 0.5695)

Ptprf ENSRNOG00000019977 (Rat)

Gene Details

protein tyrosine phosphatase, receptor type, F (Ptprf), mRNA

External Links

Gene Match (Ensembl Protein ID: ENSRNOP00000027271, Rat)

Protein Percentage 94.68%
CDS Percentage 89.25%
Ka/Ks Ratio 0.05017 (Ka = 0.0258, Ks = 0.5144)

Genome Location

Sequence Coding sequence

Length: 5763 bp    Location: 2825804..2913033   Strand: +
Raw sequence   
>XM_004871887.1
ATGGCCCTGGAGCCAGCCCCAGGGAGGATGATGGTGCCTCTTGTGCCTGCACTCGTGATGCTTGGTTTGGTGGCAGGTGCCCATGGCGACAGCAAACCTGTCTTTGTTAAGGTCCCCGAGGACCAGACAGGGCTTTCAGGAGGGGTGGCATCTTTTGTGTGCCAAGCCACTGGAGAACCTAAGCCACGCATCACATGGATGAAGAAGGGGAAGAAAGTCAGCTCCCAGCGGTTTGAGGTAATTGAATTTGATGACGGGGCAGGGTCAGTGCTGAGGATCCAGCCCTTGCGGGTACAGCGAGACGAAGCCATCTATGAGTGCACAGCCACCAACAGTTTGGGCGAGATCAACACTAGTGCCAAACTCTCAGTGCTTGAAGAGGAGCAGCTCCCGCCTGGGTTTCCATCCATTGACATGGGCCCTCAGCTGAAGGTGGTAGAGAAGGCGCGCACAGCCACCATGCTCTGTGCAGCTGGCGGAAATCCAGATCCCGAGATCTCTTGGTTCAAGGACTTCCTTCCTGTGGATCCTGCCACAAGCAATGGCCGCATCAAACAGCTACGTTCAGCAAGCCTCGGTGGTTCACCAATCAGAGGTGCCTTGCAGATTGAGAGCAGTGAGGAGTCGGACCAAGGCAAGTACGAGTGTGTGGCGACCAACTCAGCAGGCACACGCTACTCGGCCCCCGCGAACCTGTATGTACGAGATCAGCGAGAAGTGCGCCGTGTGGCTCCTCGTTTCTCCATCCCTCCTAGCAGCCAGGAGGTGATGCCAGGTGGCAGCGTGAACCTGACGTGTGTGGCAGTGGGTGCACCCATGCCCTACGTGAAGTGGATGATGGGAGCTGAGGAGCTCACCAAGGAGGACGAGATGCCAGTTGGCCGCAACGTACTGGAGCTCAACAACGTCGTGCGCTCTGCCAACTACACCTGTGTGGCCATCTCCTCACTGGGCATGATTGAGGCCACAGCCCAGGTCACAGTGAAAGCTCTCCCAAAGCCACCGATTGATCTTATAGTGACAGAGACAACTGCCACCAGCGTCACCCTGACCTGGGACTCTGGGAATTCAGAGCCTGTGTCCTACTACGGCATCCAGTACCGAGCAGCTGGCACAGAGAGCCCCTTCCAGGAGGTGGATGGTGTGGCCACCACCCGCTACAGCATTGGCGGCCTCAGCCCTTTCTCTGAATATGTCTTTCGAGTGCTGGCAGTAAACAGCATCGGCCGAGGGCCACCCAGTGAGGTGGTGCGTGCACACACCGGAGAACAGGCACCCTCCAGCCCTCCACGCCGTGTGCAGGCCCGCATGCTGAGCGCCAGCACCATGCTGGTGCAGTGGGAGCCTCCCGAGGAGCCCAATGGCATGGTGCGGGGATACCGTGTCTATTACACCCCAGACTCTCGTCGCCCTCTGAGTTCCTGGCACAAGCACAACACTGATGCAGGGCTTTTCACCACTGTGGGCAGCCTGCTGCCTAGCATCACCTACAGCCTGCGCGTCCTCGCTTTCACTGCCGTGGGTGACGGCCCACCCAGCCCCACCATCCAGGTCAAGACACAGCAGGGAGTTCCCGCGCAGCCCGTGGACTTCCAGGCTGAGGCTGAGTCAGACACTAGGATCCAGTTGTCATGGCTGCTGCCACCACAGGAGCGGATCGTCAAGTATGAGCTGGTGTACTGGGCAGCAGAGGATGAAGGCCAGCAGCACAAGGTGACCTTCGACCCCACCTCCTCCTACACCCTGGAGGACCTGAAGCCTGACACGCTGTACCGCTTCCAGCTGGCTGCCCGCTCCCACATGGGGGTGGGTGTCCTCACCCCCACCATAGAGGCCCGCACAGCACAGTCTACCCCCTCCGCCCCTCCCCAGAAGGTGACATGTGTGAGCACGGGCTCCACCACGGTCCGGGTAAGTTGGGTCCCACCACCGGCCGACAGCCGCAACGGTGTTATCACCCAATACTCCGTGGCCTATGAGGCAGTGGACGGCGAAGACCACAGGCGGCATGTGGTGGATGGCATCAGCCGCGAGCATTCCAGCTGGGACCTGGTGGGCCTGGAGAAGTGGACCGAGTACCGGGTGTGGGTGCGGGCACACACAGATGTGGGGCCCGGTCCTGAGAGCAGCCCGGTGCTGGTGCGCACCGACGAGGACGTGCCTAGCGGGCCACCACGGAAGGTGGAGGTGGAACCACTGAACTCCACTGCTGTGCATGTCTCCTGGAAGCTGCCTGTCCCCAGCAAGCAACATGGTCACATCCGTGGCTACCAGGTCATCTATGTTCGGTTAGAGAATGGTGAACCCCGAGGCGCACCCATCATTCAGGACGTCATGCTAGCTGAGCCCCAGTGGCAGCCAGAGGAGTCCGAGGACTATGAAACCACCATCAGCGGCCTCACCCCAGAGACCACCTACTCCATTACTGTTGCTGCCTACACTACCAAAGGGGACGGTGCCCGAAGCAAGCCCAAAATTGTTACTACAACAGGAGCAGTCCCAGGCCGGCCCACGATGATCATCAGCACCACAGCCATGAACACTGCACTGCTTCAGTGGCACCCACCCAAGGAGCTGCCCGGAGAGCTGCTGGGCTATCGGCTGCAGTACCGCCGGGCCGATGAGACACAGCTCAACGTTATAGATTTTGGCAAAGATGACCAGCACTTTACAGTCACTGGCCTACACAAAGGGGCCACATATGTCTTCCGGCTTGCTGCCAAGAACCGAGCTGGCCCAGGTGAGGAGTTTGAGAAGGAGATCACGACCCCTGAGGATGTGCCCAGTGGCTTTCCCCAAAACCTACGAGTGACAGGATTGACCACATCTACCACGGAGCTGGCCTGGGACCCACCAGTGCTGGCGGAGAGGAACGGGCATATCGCCAATTACACTGTAGTGTACCGTGACATCAACAGCCAGCAGGAGCTACAGGACGTCACTGCTGACACCCACTTTACACTCTCCGGCCTCAAGCCGGATACCACTTACGACGTCAAGGTCCGCGCATATACCAGCAAAGGTGCCGGCCCACTCAGCCCCAGCATCCAGTCCCGGACCATGCCTGTGGAGCAAGTGTTTGCCAAGAACTTCCGTGTGGCTGCTGCAATGAAGACATCTGTGCTGCTCAGCTGGGAAGTCCCTGACTCCTACAAGTCAGCCGTACCCTTCAAGATTCTGTACAATGGGCAGAGTGTAGAGGTGGACGGGCACTCGATGCACAAGCTGATCTCAGACCTGCAGCCCAACACAGAGTACTCATTTGTGCTCATGAACCGTGGCAACAGTGCAGGGGGCCTACAACACCTCGTGTCCATCCGCACAGCCCCTGACATCCTGCCACACAAGCCACTGCCTGCCTCGGCCTACATAGAGGATGGCCGCTTCACCCTCTCCATGCCCCCTGTGCAGGACCCCTCACTGGTCAGGTGGTTCTACATTGTGGTGGTGCCCATTGACCGTGTGGGTGGGAACATACTGGAACCAAGATGGAGCACACCCGAGGAACTGAAGCTGGATGAGCTTCTGGAGGCCATTGAGCAGCGTGGTGAGTCACAGCAGCGGCGTCGGCGGCAGGCAGACCAGCTAAAGCCATATGTGGCAGCACAAATGGATGTGCTCCCTGAGACCTTCACTCTGGGGGACAAGAAGACCTACCAGGGCTTCTACAACCAGCCACTCTCTTCAGACCTGAGTTACCAGTGCTTTGTACTCGCTTTCCTGAAGGAACCTGTGGATCAGAAGCGCTATGCCACCAGCCCCTACTCGGACGAGATTGTAGTCCAAGTGACACCAGCTCAGCAGCAAGAGGAACCGGAGATGCTGTGGGTGACAGGCCCCGTCCTGGCAGTCATTCTTATCATACTCATTGTCATCGCCATCCTTCTCTTTAAGAGGAAAAGGACCCACTCCCCATCATCAAAAGATGAGCAGTCGATTGGGCTGAAGGACTCCCTGCTGGCCCACTCCTCCGACCCTGTGGAGATGAGGAGGCTCAACTACCAGACTCCAGGTATGCGAGACCATCCACCCATCCCCATCACCGACCTGGCAGATAACATTGAGCGCCTCAAAGCCAACGATGGCCTCAAGTTCTCCCAGGAATATGAGTCCATTGACCCTGGACAGCAGTTCACTTGGGAGAATTCCAACCTGGAGGTGAACAAGCCTAAAAACCGCTACGCAAATGTCATTGCCTATGACCACTCTCGAGTCATCCTGACCTCCATCGACGGTGTCCCTGGGAGTGACTACATTAACGCCAACTACATCGATGGCTATCGAAAGCAGAATGCCTACATCGCCACCCAGGGCCCACTGCCCGAGACCATGGGAGATTTCTGGCGGATGGTGTGGGAACAGCGCACCGCCATTGTGGTCATGATGACACGGCTGGAGGAGAAGTCCCGGGTAAAGTGTGATCAGTACTGGCCACCCCGTGGCACTGAGACCTATGGCCTCATTCAAGTGACCTTGCTGGACACTGTGGAGCTGGCTACATATACTGTGCGCACCTTTGCGCTCCACAAGAGTGGCTCCAGTGAGAAGCGTGAGCTGCGTCAGTTCCAGTTCATGGCCTGGCCAGACCATGGGGTTCCCGAATACCCAACTCCCATCCTGGCCTTCCTGCGAAGGGTCAAGGCCTGCAACCCACTAGATGCAGGGCCCATGGTGGTGCACTGCAGTGCTGGTGTGGGCCGCACAGGCTGCTTCATCGTTATTGATGCCATGCTGGAGCGTATGAAGCATGAGAAGACAGTCGACATCTACGGCCATGTGACGTGCATGCGATCACAGAGGAACTACATGGTCCAGACAGAAGACCAGTATGTGTTCATCCATGAGGCGCTGCTGGAGGCGGCCACATGTGGACACACCGAGGTGCCTGCCCGCAACCTCTATGCCCACATCCAGAAGCTGGGCCAAGTGCCTCCCGGGGAGAGCGTGACTGCCATGGAGCTGGAGTTCAAGTTGCTGGCCAGCTCCAAGGCGCACACATCTCACTTCATCAGCGCCAACCTGCCCTGCAACAAGTTTAAGAACCGGCTGGTAAACATCATGCCCTATGAACTGACCCGTGTCTGTCTGCAGCCCATCCGTGGTGTGGAGGGCTCCGACTACATCAATGCCAGCTTCCTGGATGGATATAGACAGCAGAAGGCCTACATAGCTACACAGGGGCCTCTGGCAGAGAGCACCGAGGACTTCTGGCGCATGCTATGGGAGCACAATTCTACCATCATCGTCATGCTGACCAAGCTTCGGGAGATGGGCAGGGAGAAGTGTCACCAGTACTGGCCCGCAGGGCGCTCTGCTCGCTACCAGTACTTCGTTGTTGACCCGATGGCTGAATACAACATGCCACAGTATATCCTGCGTGAGTTCAAGGTCACGGATGCTCGGGATGGACAGTCAAGGACAATTCGCCAGTTCCAGTTCACAGACTGGCCTGAGCAGGGCGTACCCAAGACGGGGGAGGGCTTCATTGACTTCATCGGTCAAGTGCACAAGACCAAGGAGCAGTTTGGTCAGGATGGACCCATTACAGTGCACTGCAGTGCTGGTGTGGGCCGCACCGGAGTCTTTATCACTCTGAGCATAGTCTTGGAGCGCATGCGCTACGAGGGCGTGGTCGACATGTTCCAGACTGTGAAGACCCTGCGCACACAGCGTCCTGCAATGGTGCAGACAGAGGACCAGTACCAGCTATGCTACCGTGCAGCCCTGGAGTACCTCGGCAGCTTTGACCACTATGCAACGTAA

Related Sequences

XP_004871944.1 Protein

Ptprf PREDICTED: receptor-type tyrosine-protein phosphatase F isoform X12 [Heterocephalus glaber]

Length: 1920 aa      View alignments
>XP_004871944.1
MALEPAPGRMMVPLVPALVMLGLVAGAHGDSKPVFVKVPEDQTGLSGGVASFVCQATGEPKPRITWMKKGKKVSSQRFEVIEFDDGAGSVLRIQPLRVQRDEAIYECTATNSLGEINTSAKLSVLEEEQLPPGFPSIDMGPQLKVVEKARTATMLCAAGGNPDPEISWFKDFLPVDPATSNGRIKQLRSASLGGSPIRGALQIESSEESDQGKYECVATNSAGTRYSAPANLYVRDQREVRRVAPRFSIPPSSQEVMPGGSVNLTCVAVGAPMPYVKWMMGAEELTKEDEMPVGRNVLELNNVVRSANYTCVAISSLGMIEATAQVTVKALPKPPIDLIVTETTATSVTLTWDSGNSEPVSYYGIQYRAAGTESPFQEVDGVATTRYSIGGLSPFSEYVFRVLAVNSIGRGPPSEVVRAHTGEQAPSSPPRRVQARMLSASTMLVQWEPPEEPNGMVRGYRVYYTPDSRRPLSSWHKHNTDAGLFTTVGSLLPSITYSLRVLAFTAVGDGPPSPTIQVKTQQGVPAQPVDFQAEAESDTRIQLSWLLPPQERIVKYELVYWAAEDEGQQHKVTFDPTSSYTLEDLKPDTLYRFQLAARSHMGVGVLTPTIEARTAQSTPSAPPQKVTCVSTGSTTVRVSWVPPPADSRNGVITQYSVAYEAVDGEDHRRHVVDGISREHSSWDLVGLEKWTEYRVWVRAHTDVGPGPESSPVLVRTDEDVPSGPPRKVEVEPLNSTAVHVSWKLPVPSKQHGHIRGYQVIYVRLENGEPRGAPIIQDVMLAEPQWQPEESEDYETTISGLTPETTYSITVAAYTTKGDGARSKPKIVTTTGAVPGRPTMIISTTAMNTALLQWHPPKELPGELLGYRLQYRRADETQLNVIDFGKDDQHFTVTGLHKGATYVFRLAAKNRAGPGEEFEKEITTPEDVPSGFPQNLRVTGLTTSTTELAWDPPVLAERNGHIANYTVVYRDINSQQELQDVTADTHFTLSGLKPDTTYDVKVRAYTSKGAGPLSPSIQSRTMPVEQVFAKNFRVAAAMKTSVLLSWEVPDSYKSAVPFKILYNGQSVEVDGHSMHKLISDLQPNTEYSFVLMNRGNSAGGLQHLVSIRTAPDILPHKPLPASAYIEDGRFTLSMPPVQDPSLVRWFYIVVVPIDRVGGNILEPRWSTPEELKLDELLEAIEQRGESQQRRRRQADQLKPYVAAQMDVLPETFTLGDKKTYQGFYNQPLSSDLSYQCFVLAFLKEPVDQKRYATSPYSDEIVVQVTPAQQQEEPEMLWVTGPVLAVILIILIVIAILLFKRKRTHSPSSKDEQSIGLKDSLLAHSSDPVEMRRLNYQTPGMRDHPPIPITDLADNIERLKANDGLKFSQEYESIDPGQQFTWENSNLEVNKPKNRYANVIAYDHSRVILTSIDGVPGSDYINANYIDGYRKQNAYIATQGPLPETMGDFWRMVWEQRTAIVVMMTRLEEKSRVKCDQYWPPRGTETYGLIQVTLLDTVELATYTVRTFALHKSGSSEKRELRQFQFMAWPDHGVPEYPTPILAFLRRVKACNPLDAGPMVVHCSAGVGRTGCFIVIDAMLERMKHEKTVDIYGHVTCMRSQRNYMVQTEDQYVFIHEALLEAATCGHTEVPARNLYAHIQKLGQVPPGESVTAMELEFKLLASSKAHTSHFISANLPCNKFKNRLVNIMPYELTRVCLQPIRGVEGSDYINASFLDGYRQQKAYIATQGPLAESTEDFWRMLWEHNSTIIVMLTKLREMGREKCHQYWPAGRSARYQYFVVDPMAEYNMPQYILREFKVTDARDGQSRTIRQFQFTDWPEQGVPKTGEGFIDFIGQVHKTKEQFGQDGPITVHCSAGVGRTGVFITLSIVLERMRYEGVVDMFQTVKTLRTQRPAMVQTEDQYQLCYRAALEYLGSFDHYAT