Details from NCBI annotation

Gene Symbol Sf3b1
Gene Name splicing factor 3b, subunit 1, 155kDa, transcript variant X1
Entrez Gene ID 101707227

Database interlinks

Part of NW_004624889.1 (Scaffold)

For more information consult the page for NW_004624889.1 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible homologs of the naked mole-rat gene and compared to it.

SF3B1 ENSCPOG00000009353 (Guinea pig)

Gene Details

splicing factor 3b, subunit 1, 155kDa

External Links

Gene Match (Ensembl Protein ID: ENSCPOP00000008395, Guinea pig)

Protein Percentage 100.0%
CDS Percentage 92.72%
Ka/Ks Ratio 0.001 (Ka = 0.0003, Ks = 0.3288)

SF3B1 ENSG00000115524 (Human)

Gene Details

splicing factor 3b, subunit 1, 155kDa

External Links

Gene Match (Ensembl Protein ID: ENSP00000335321, Human)

Protein Percentage 100.0%
CDS Percentage 90.08%
Ka/Ks Ratio 0.001 (Ka = 0.0005, Ks = 0.5245)

Sf3b1 ENSMUSG00000025982 (Mouse)

Gene Details

splicing factor 3b, subunit 1

External Links

Gene Match (Ensembl Protein ID: ENSMUSP00000027127, Mouse)

Protein Percentage 100.0%
CDS Percentage 89.52%
Ka/Ks Ratio 0.001 (Ka = 0.0006, Ks = 0.5662)

Sf3b1 ENSRNOG00000013516 (Rat)

Gene Details

splicing factor 3b, subunit 1 (Sf3b1), mRNA

External Links

Gene Match (Ensembl Protein ID: ENSRNOP00000019126, Rat)

Protein Percentage 100.0%
CDS Percentage 88.91%
Ka/Ks Ratio 0.001 (Ka = 0.0006, Ks = 0.6107)

Genome Location

Sequence Coding sequence

Length: 3915 bp    Location: 2796354..2835592   Strand: +
>XM_004871703.1
ATGGCGAAGATCGCCAAGACTCACGAAGATATTGAAGCACAGATTCGAGAGATTCAAGGCAAGAAGGCAGCTCTTGATGAAGCACAAGGAGTGGGCCTTGATTCCACAGGCTACTACGACCAGGAGATTTACGGTGGAAGCGACAGCAGATTTGCTGGCTATGTCACATCAATTGCTGCCACTGAACTTGAAGATGATGACGATGACTACTCATCATCGACGAGCTTGCTTGGCCAGAAGAAGCCAGGGTACCATGCCCCCGTGGCATTGCTTAATGATATCCCACAGTCAACAGAACAGTATGACCCGTTTGCTGAGCACCGGCCTCCAAAGATTGCAGACCGGGAAGATGAATACAAAAAGCACAGGCGGACCATGATCATTTCCCCAGAGCGTCTCGACCCTTTTGCAGATGGAGGGAAGACCCCTGACCCTAAAATGAACGCTCGGACTTACATGGATGTAATGCGAGAACAGCACTTGACTAAGGAAGAGAGAGAAATTAGGCAACAGCTAGCAGAGAAAGCTAAAGCTGGAGAGCTGAAAGTCGTCAATGGCGCGGCAGCGTCCCAGCCTCCCTCAAAGCGAAAGCGGCGCTGGGATCAGACTGCTGACCAGACTCCTGGTGCCACTCCCAAAAAGCTGTCCAGTTGGGACCAGGCAGAGACCCCTGGGCATACCCCATCTTTAAGATGGGATGAGACACCAGGTCGTGCAAAAGGAAGCGAAACCCCTGGAGCAACCCCTGGCTCAAAAATTTGGGATCCCACGCCAAGTCACACACCTGCCGGAGCTGCTACTCCTGGCCGAGGCGACACACCTGGCCATGCGACCCCGGGCCATGGAGGCGCGACTTCTAGCGCTCGTAAAAACAGATGGGACGAGACCCCCAAAACTGAGAGAGATACTCCCGGGCACGGAAGTGGATGGGCTGAGACTCCTCGAACAGATCGAGGTGGAGATTCAATTGGAGAGACCCCGACTCCTGGAGCCAGTAAAAGAAAGTCCCGATGGGATGAGACCCCGGCCAGTCAGATGGGTGGAAGCACTCCTGTTCTGACCCCTGGAAAGACGCCCATTGGCACCCCAGCCATGAACATGGCCACCCCAACTCCAGGTCACATTATGAGTATGACCCCTGAACAGCTTCAGGCTTGGAGGTGGGAGAGAGAAATTGATGAGCGAAACCGCCCACTCTCTGATGAAGAATTGGATGCTATGTTCCCAGAAGGATACAAGGTACTTCCACCTCCAGCTGGTTATGTTCCCATTCGAACCCCGGCCCGGAAGCTGACAGCAACTCCAACACCATTAGGTGGAATGACTGGTTTCCACATGCAGACAGAAGACAGAACTATGAAAAGTGTCAATGACCAGCCTTCTGGAAATCTTCCATTTTTAAAACCTGATGATATTCAGTACTTTGATAAACTCTTGGTTGATGTTGATGAATCAACACTTAGTCCAGAAGAGCAAAAAGAGAGAAAAATAATGAAGCTACTTTTAAAGATTAAGAATGGAACACCTCCAATGAGAAAGGCTGCATTGCGCCAGATCACTGATAAAGCGAGGGAGTTTGGAGCTGGGCCTCTGTTTAATCAGATTCTTCCCCTGCTGATGTCTCCTACACTTGAGGACCAGGAGCGCCATTTGCTTGTGAAAGTCATTGATAGGATATTGTACAAACTAGATGACTTAGTACGGCCGTATGTGCACAAGATTCTTGTGGTCATTGAACCGCTGTTAATTGATGAAGATTACTATGCCAGAGTGGAAGGCCGAGAGATCATTTCTAATTTGGCAAAGGCTGCTGGTCTGGCTACTATGATCTCCACCATGAGACCTGACATAGACAACATGGACGAGTACGTCCGTAACACGACAGCTCGAGCCTTTGCTGTTGTAGCCTCGGCCCTCGGCATTCCTTCCTTATTGCCATTCTTAAAAGCTGTGTGCAAAAGCAAGAAGTCTTGGCAAGCCAGACACACGGGTATTAAGATTGTACAGCAGATAGCTATTCTCATGGGCTGTGCCATCCTGCCACATCTCAGAAGCTTAGTTGAAATCATTGAGCATGGTCTCGTGGATGAGCAGCAGAAAGTTCGGACCATCAGTGCGCTGGCCATTGCTGCCTTGGCTGAAGCAGCGACTCCTTATGGTATCGAATCTTTTGATTCAGTGCTGAAGCCCCTGTGGAAGGGTATCCGCCAGCACCGAGGAAAGGGTTTGGCTGCTTTCTTAAAGGCTATTGGGTATCTTATCCCTCTCATGGATGCAGAATATGCCAACTACTATACCCGAGAAGTGATGTTAATCCTTATTCGAGAATTCCAGTCTCCCGATGAAGAAATGAAGAAAATCGTGCTGAAGGTAGTAAAACAGTGTTGTGGAACAGATGGTGTAGAAGCAAACTACATTAAAACAGAGATTCTTCCTCCTTTCTTTAAACACTTCTGGCAGCACAGAATGGCTTTGGATAGAAGAAATTACCGACAGTTAGTTGATACCACTGTGGAGTTAGCAAACAAAGTAGGTGCGGCAGAAATCATATCCAGGATTGTGGACGATCTGAAAGATGAAGCTGAGCAGTACCGAAAAATGGTGATGGAAACAATTGAGAAAATTATGGGCAACCTGGGAGCAGCCGATATTGATCACAAACTTGAAGAACAACTGATTGATGGTATTCTTTATGCTTTCCAAGAACAGACAACAGAGGACTCTGTGATGTTGAATGGCTTTGGCACAGTGGTCAATGCACTTGGGAAACGAGTCAAACCGTACTTGCCTCAGATCTGCGGTACAGTTCTGTGGCGTTTAAACAACAAATCTGCCAAAGTCAGGCAGCAGGCAGCGGATTTGATCTCTCGTACTGCTGTGGTCATGAAGACTTGTCAGGAGGAAAAGTTGATGGGGCACTTGGGTGTTGTGCTGTATGAATATTTGGGTGAAGAGTATCCCGAAGTATTGGGCAGCATTCTTGGAGCCCTGAAGGCTATTGTAAATGTAATAGGTATGCACAAGATGACCCCGCCAATTAAGGATCTGCTGCCCAGGCTCACTCCCATCTTGAAGAACAGGCATGAGAAAGTGCAAGAGAACTGCATCGACCTTGTTGGACGTATTGCTGACAGGGGAGCTGAATATGTTTCTGCAAGAGAGTGGATGAGGATTTGCTTTGAGCTTTTAGAGCTCCTAAAAGCTCACAAAAAAGCTATTCGTAGAGCCACGGTCAACACATTTGGCTATATCGCAAAGGCCATTGGCCCTCACGATGTCTTGGCCACGCTCCTAAACAACCTCAAGGTTCAGGAGAGGCAGAACAGAGTGTGCACGACGGTGGCCATAGCTATTGTCGCCGAGACCTGCTCCCCCTTCACAGTGCTCCCCGCCCTCATGAACGAGTACAGAGTTCCTGAGCTGAATGTTCAGAACGGGGTGCTGAAGTCTCTGTCCTTCTTGTTCGAATATATTGGTGAAATGGGCAAAGACTACATTTACGCCGTGACGCCGTTACTGGAAGATGCTTTAATGGATAGGGACCTTGTGCACAGGCAGACGGCCAGTGCGGTGGTGCAGCACATGTCGCTGGGCGTGTATGGCTTTGGCTGTGAGGATTCTCTGAATCACCTGCTGAACTACGTGTGGCCCAACGTGTTCGAGACATCGCCCCACGTGATCCAGGCGGTCATGGGTGCGCTGGAGGGGCTCCGGGTCGCCATCGGGCCATGCAGGATGCTGCAGTACTGCCTGCAGGGTCTGTTTCATCCGGCTCGGAAGGTCCGGGATGTGTACTGGAAGATCTACAACTCCATCTACATCGGCTCCCAGGACGCGCTCATCGCCCACTACCCCCGCATCTACAACGACGACAAGAACACCTACATCCGCTACGAACTCGACTACATCTTGTAG

Related Sequences

XP_004871760.1 Protein

Sf3b1 PREDICTED: splicing factor 3B subunit 1 isoform X1 [Heterocephalus glaber]

Length: 1304 aa      View alignments
>XP_004871760.1
MAKIAKTHEDIEAQIREIQGKKAALDEAQGVGLDSTGYYDQEIYGGSDSRFAGYVTSIAATELEDDDDDYSSSTSLLGQKKPGYHAPVALLNDIPQSTEQYDPFAEHRPPKIADREDEYKKHRRTMIISPERLDPFADGGKTPDPKMNARTYMDVMREQHLTKEEREIRQQLAEKAKAGELKVVNGAAASQPPSKRKRRWDQTADQTPGATPKKLSSWDQAETPGHTPSLRWDETPGRAKGSETPGATPGSKIWDPTPSHTPAGAATPGRGDTPGHATPGHGGATSSARKNRWDETPKTERDTPGHGSGWAETPRTDRGGDSIGETPTPGASKRKSRWDETPASQMGGSTPVLTPGKTPIGTPAMNMATPTPGHIMSMTPEQLQAWRWEREIDERNRPLSDEELDAMFPEGYKVLPPPAGYVPIRTPARKLTATPTPLGGMTGFHMQTEDRTMKSVNDQPSGNLPFLKPDDIQYFDKLLVDVDESTLSPEEQKERKIMKLLLKIKNGTPPMRKAALRQITDKAREFGAGPLFNQILPLLMSPTLEDQERHLLVKVIDRILYKLDDLVRPYVHKILVVIEPLLIDEDYYARVEGREIISNLAKAAGLATMISTMRPDIDNMDEYVRNTTARAFAVVASALGIPSLLPFLKAVCKSKKSWQARHTGIKIVQQIAILMGCAILPHLRSLVEIIEHGLVDEQQKVRTISALAIAALAEAATPYGIESFDSVLKPLWKGIRQHRGKGLAAFLKAIGYLIPLMDAEYANYYTREVMLILIREFQSPDEEMKKIVLKVVKQCCGTDGVEANYIKTEILPPFFKHFWQHRMALDRRNYRQLVDTTVELANKVGAAEIISRIVDDLKDEAEQYRKMVMETIEKIMGNLGAADIDHKLEEQLIDGILYAFQEQTTEDSVMLNGFGTVVNALGKRVKPYLPQICGTVLWRLNNKSAKVRQQAADLISRTAVVMKTCQEEKLMGHLGVVLYEYLGEEYPEVLGSILGALKAIVNVIGMHKMTPPIKDLLPRLTPILKNRHEKVQENCIDLVGRIADRGAEYVSAREWMRICFELLELLKAHKKAIRRATVNTFGYIAKAIGPHDVLATLLNNLKVQERQNRVCTTVAIAIVAETCSPFTVLPALMNEYRVPELNVQNGVLKSLSFLFEYIGEMGKDYIYAVTPLLEDALMDRDLVHRQTASAVVQHMSLGVYGFGCEDSLNHLLNYVWPNVFETSPHVIQAVMGALEGLRVAIGPCRMLQYCLQGLFHPARKVRDVYWKIYNSIYIGSQDALIAHYPRIYNDDKNTYIRYELDYIL