Sequence details NCBI ID: XM_004871558.1 (Coding sequence)   Best Hit

Details from NCBI annotation

Gene Symbol Phf16
Gene Name PHD finger protein 16, transcript variant X1
Entrez Gene ID 101713954

Database interlinks

Part of NW_004624887.1 (Scaffold)

For more information consult the page for NW_004624887.1 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible homologs of the naked mole-rat gene and compared to it.

PHF16 ENSCPOG00000014766 (Guinea pig)

Gene Details

PHD finger protein 16

External Links

Gene Match (Ensembl Protein ID: ENSCPOP00000013304, Guinea pig)

Protein Percentage 92.08%
CDS Percentage 93.75%
Ka/Ks Ratio 0.28845 (Ka = 0.0405, Ks = 0.1403)

PHF16 ENSG00000102221 (Human)

Gene Details

PHD finger protein 16

External Links

Gene Match (Ensembl Protein ID: ENSP00000218343, Human)

Protein Percentage 86.27%
CDS Percentage 89.43%
Ka/Ks Ratio 0.31574 (Ka = 0.0758, Ks = 0.2399)

Phf16 ENSMUSG00000037315 (Mouse)

Gene Details

PHD finger protein 16

External Links

Gene Match (Ensembl Protein ID: ENSMUSP00000048529, Mouse)

Protein Percentage 81.17%
CDS Percentage 84.69%
Ka/Ks Ratio 0.24429 (Ka = 0.1049, Ks = 0.4295)

RGD1563945 ENSRNOG00000039837 (Rat)

Gene Details

uncharacterized protein LOC299305

External Links

Gene Match (Ensembl Protein ID: ENSRNOP00000057855, Rat)

Protein Percentage 79.08%
CDS Percentage 82.27%
Ka/Ks Ratio 0.25338 (Ka = 0.1282, Ks = 0.5061)

Genome Location

Sequence Coding sequence

Length: 2472 bp    Location: 3717003..3872416   Strand: +
Raw sequence   
>XM_004871558.1
ATGAAACGCCATAGGCCTCTCAGCAGCACTGACAGTTCAGATGAGTGTCCTTCCACTTCCTTTACTTCTGGCCCAATGTATAGGAGCAAGTCAAAAATTCCAAAAGAACACAAGAAACCTGATGAGGTATTCCGGAAGGACCTCATCAGTGCCATGAAAATTCCAGATTCTCACCACATTAATCCTGATACCTATTACCTCTTTTCTGACACATGGAAAGAAGAATGGGAAAAGGGAGTCCAAGTACCAGCCAATCTAGACAATGTTCCACAGCCTTCTCTCAGGATTATAGCCGAAAAGGAAAAGGAAATTCTCTTTGTTCGACCCCGGAAATACATCCGTTGCTCCAGTCCAGAGACCATAGAGCCTGGCTACATTAACATCCAGGAGCTGGCAGCATCCACATGCCGCTATGACCTAGATGACATGGACATCTTCTGGCTTCAGGAGTTTAATGAAGACCTCACAGAAATGGGTCATGGGCCAGTTGATGAGACCCTTATGGAAAAAACAATAGAAGTCCTGGAACGTCATTGCTATGAAAATATGAACCATGCTATTGAGACAGAGGAAGGGCTAGGTATAGAGTATGATGAAGATGTGATCTGTGATGTGTGCCAGTCTCCAGACAGTGAAGAAGGGAATGATATGGTATTCTGTGATAAGTGTAACGTCTGTGTGCATCAGGCCTGCTATGGCATTATAAAGGTCCCAGAAGGCAGCTGGCTATGTCGCTCCTGTGTCCTGGGTATTCATCCACAGTGTCTGTTATGTCCAAAGAAAGGTGGAGCCATGAAGACCAACAGGACAGGGACTAAATGGGCTCACGTCAGCTGTGCACTGTGGATTCCAGAGGTCAGCATTGCTTATCCTGAGAGGATGGAACCAATCACAAAGCTCTCGCACATCCCACCTAGCCGGTGGGCCTTAGTTTGCACCCTGTGCAAGTTGAAGACGGGGGCTTGTATTCAGTGCTCCGTGAAAAGCTGCATCACTGCCTTCCATGTCACCTGTGCCTTTGAGCACAACCTAGAGATGAAGACCATCCTAGGTGAGGGGGATGAAGTAAAGTTCAAGTCTTACTGCCTCAAGCATGGCCAAAACAGGCAGAAACCAGGGGAGATTGAGTACCCCCACCACAGAGCTGCCGAGCAGAGCCAGGCCAAAAGTGAGAAAACCAGCCTTCGGGAACAGAAGCTTAGGGAGCTGGAGGAGGAGTTCTATACCTTGGTCCAAGTGGAAGATGTGGCAGCAGAGCTGGGGCAGCCCACACTAGTTGTGGACTTTATCTATAACTACTGGAAACTAAAGCGCAAAAGCAACTTCAACAAGCCATTATTTCCTCTAAAGAAGGATGAAGAAAATGGCCTTGTACAGCCAAAAGAGGAAAGTATTCACACTCGCATGCAAATGTTTATGCATCTACGGCAGGACTTGGAAAGGGTCCGAAATCTGTGCTACATGATAAGCAGGAGAGAGAAGCTGAAACTATCACACAGCAAAATACAGGAACAGATCTTCAATTTGCAGGCCCAGCTTCTTAACCAAGAAATTGGTGAAGGACTTCCTTTGACAAATACACTAGAAAACTCATTGTTTTACCCACCACCAAGAATTACCTTAAAGTTAAAAATGCCCAGATCAACCCTGGAAGACTCCAGAAACAGCTCCACAGAAGCTGACCACCGACCCTACTCTCCTGACAGCAGCTCCCCTGGTCCCACTAAAAGAAACATGCAGGTGCCTTCGGAGCCTCTAGAAATGAAAGTGAAATCGCATTCAAGACATCCACTAGAGAGCAAGAGTAACTGTTTGCTGGCCAGTCTTAGTTATTCTCAGAGTGAAGCAAAGGATTCCAGTCCTGCTCGGAGAGCTCCATCTTCAGAGTTCTATCTTGGGCAGTCACTGGGGAAGCCTCTAGCCCTTCAAGCTGCCCTCCATGGACAGTCTTCCATTGAGAATGGGAAAAATGAGCCTAACCCCAAGTTTGCCAAATCCAATGGCCTAGAGGGTAGCTGGTCTGGGAATGTCACCCAAAAAGAAACCTCAAGTGAGGTGTTCTGTGACCAAGAGTCCATGCTCAGTTCCCACTTGGCCAGTCAGGGTACCTTTAGAAAATCCACCATAGAACACTTTAGCAGGTCCTTTAAAGAGGCCACCAACAGGTGGGTGAGGACCTCTGAGGACCTTCAGTGCTGTGTGAAGCCAACCAAGAGTGTGAGCCCTAAAGAACAGTTCTGGGGTAGGCAGCTTCTCAGACGGTCTGCAGGGAAAGCTTCATATCAGGAAAATGATGGATATTGTCCAGATTTGGAATTAAGTGATTCAGAAGCTGAAAGTGATGGGAACAAAGAAAAATCCAGGGTAAGAAAAGATAGCTCAGATAGGGAAAATCCTCCCCATGATTCTAGACGGGATTGTCATGGTAAAAGCAAGACACATCCTCTTTCCCATAGTTCAATGCAAAGGTGA

Related Sequences

XP_004871615.1 Protein

Phf16 PREDICTED: protein Jade-3 isoform X1 [Heterocephalus glaber]

Length: 823 aa      View alignments
>XP_004871615.1
MKRHRPLSSTDSSDECPSTSFTSGPMYRSKSKIPKEHKKPDEVFRKDLISAMKIPDSHHINPDTYYLFSDTWKEEWEKGVQVPANLDNVPQPSLRIIAEKEKEILFVRPRKYIRCSSPETIEPGYINIQELAASTCRYDLDDMDIFWLQEFNEDLTEMGHGPVDETLMEKTIEVLERHCYENMNHAIETEEGLGIEYDEDVICDVCQSPDSEEGNDMVFCDKCNVCVHQACYGIIKVPEGSWLCRSCVLGIHPQCLLCPKKGGAMKTNRTGTKWAHVSCALWIPEVSIAYPERMEPITKLSHIPPSRWALVCTLCKLKTGACIQCSVKSCITAFHVTCAFEHNLEMKTILGEGDEVKFKSYCLKHGQNRQKPGEIEYPHHRAAEQSQAKSEKTSLREQKLRELEEEFYTLVQVEDVAAELGQPTLVVDFIYNYWKLKRKSNFNKPLFPLKKDEENGLVQPKEESIHTRMQMFMHLRQDLERVRNLCYMISRREKLKLSHSKIQEQIFNLQAQLLNQEIGEGLPLTNTLENSLFYPPPRITLKLKMPRSTLEDSRNSSTEADHRPYSPDSSSPGPTKRNMQVPSEPLEMKVKSHSRHPLESKSNCLLASLSYSQSEAKDSSPARRAPSSEFYLGQSLGKPLALQAALHGQSSIENGKNEPNPKFAKSNGLEGSWSGNVTQKETSSEVFCDQESMLSSHLASQGTFRKSTIEHFSRSFKEATNRWVRTSEDLQCCVKPTKSVSPKEQFWGRQLLRRSAGKASYQENDGYCPDLELSDSEAESDGNKEKSRVRKDSSDRENPPHDSRRDCHGKSKTHPLSHSSMQR